SMTL ID : 4uu0.1

CRYSTAL STRUCTURE OF (SR) CALCIUM-ATPASE E2(TG) IN THE PRESENCE OF 14:1 PC

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

1 x TG1: OCTANOIC ACID [3S-[3ALPHA, 3ABETA, 4ALPHA, 6BETA, 6ABETA, 7BETA, 8ALPHA(Z), 9BALPHA]]-6-(ACETYLOXY)-2,3,-3A,4,5,6,6A,7,8,9B-DECAHYDRO-3,3A-DIHYDROXY-3,6,9-TRIMETHYL-8-[(2-METHYL-1-OXO-2-BUTENYL)OX Y]-2-OXO-4-(1-OXOBUTOXY)-AZULENO[4,5-B]FURAN-7-YL ESTER(Non-covalent)

TG1.1: 18 residues within 4Å: Chain A: L.254, E.256, F.257, Q.260, L.261, V.264, I.268, A.307, I.762, I.766, N.769, V.770, V.773, L.829, I.830, F.835, Y.838, M.839 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:L.254, A:F.257, A:F.257, A:F.257, A:Q.260, A:L.261, A:L.261, A:I.268, A:I.762, A:I.766, A:I.766, A:N.769, A:V.770, A:V.773, A:L.829, A:I.830, A:F.835, A:F.835 Hydrogen bonds: A:L.829, A:I.830

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: K.493, A.518, P.519, N.629, R.679 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.629, A:R.679, A:R.679 Water bridges: A:R.561, A:C.562

1 x K: POTASSIUM ION(Non-covalent)

K.3: 6 residues within 4Å: Chain A: Q.245, L.712, K.713, A.715, G.718, E.733 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:L.712, A:K.713, A:A.715, A:E.733, H2O.8

1 x MG: MAGNESIUM ION(Non-covalent)

MG.4: 4 residues within 4Å: Chain A: D.704, G.705, D.708 Ligands: SO4.6 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.704, A:D.708, H2O.4, H2O.7, H2O.8

1 x TBU: TERTIARY-BUTYL ALCOHOL(Non-functional Binders)

TBU.5: 4 residues within 4Å: Chain A: T.354, T.626, G.627 Ligands: SO4.6 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.354, A:T.354, A:T.626, A:G.627

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.6: 5 residues within 4Å: Chain A: D.352, T.354, D.704 Ligands: MG.4, TBU.5 8 PLIP interactions: 8 interactions with chain A Water bridges: A:G.183, A:D.352, A:D.352, A:D.352, A:T.354, A:T.354, A:D.704, A:D.704

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Drachmann, N.D. et al., Comparing Crystal Structures of Ca(2+) -ATPase in the Presence of Different Lipids. FEBS J. (2014)

Release Date

2014-10-01

Peptides

SERCA1A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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SERCA1A

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