SMTL ID : 4wsx.3 (3 other biounits)

The crystal structure of hemagglutinin from A/Jiangxi-Donghu/346/2013 influenza virus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

hetero-3-3-mer

Ligands

6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 4 residues within 4Å: Chain A: R.166, G.237, N.239 Chain E: P.218 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.239 NAG.2: 5 residues within 4Å: Chain B: H.75, N.79, N.82 Chain C: E.108 Chain D: E.64 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.82 NAG.3: 5 residues within 4Å: Chain A: P.218 Chain C: R.166, G.237, D.238, N.239 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:G.237, C:N.239 NAG.4: 3 residues within 4Å: Chain D: H.75, N.79, N.82 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:N.82 NAG.5: 6 residues within 4Å: Chain C: P.218 Chain E: R.166, S.204, G.237, D.238, N.239 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:G.237, E:N.239 NAG.6: 5 residues within 4Å: Chain A: E.108 Chain F: H.75, G.78, N.79, N.82 1 PLIP interactions: 1 interactions with chain F Hydrogen bonds: F:N.82

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, H. et al., Structure and receptor binding preferences of recombinant hemagglutinins from avian and human h6 and h10 influenza a virus subtypes. J.Virol. (2015)

Release Date

2015-02-25

Peptides

Hemagglutinin HA1 chain: ACE
Hemagglutinin HA2 chain: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

C
K

E
S

B
F

D
L

F
T

Hemagglutinin HA1 chain

Hemagglutinin HA2 chain

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