SMTL ID : 4wvy.2 (2 other biounits)

Double-heterohexameric rings of full-length Rvb1(ATP)/Rvb2(apo)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.64 Å

Oligo State

hetero-6-6-mer

Ligands

6 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 21 residues within 4Å: Chain A: A.18, H.19, I.22, G.39, F.40, V.41, G.72, P.73, G.74, T.75, G.76, K.77, T.78, A.79, D.303, Y.367, I.375, R.379, L.404, R.405, L.408 19 PLIP interactions: 19 interactions with chain A Hydrogen bonds: A:A.18, A:V.41, A:G.74, A:T.75, A:G.76, A:G.76, A:K.77, A:T.78, A:T.78, A:A.79, A:D.303, A:Y.367, A:R.379, A:R.379 Salt bridges: A:H.19, A:K.77, A:R.405, A:R.405, A:R.405 ATP.2: 21 residues within 4Å: Chain C: A.18, H.19, I.22, G.39, F.40, V.41, G.72, P.73, G.74, T.75, G.76, K.77, T.78, A.79, D.303, Y.367, I.375, R.379, L.404, R.405, L.408 19 PLIP interactions: 19 interactions with chain C Hydrogen bonds: C:A.18, C:V.41, C:G.74, C:T.75, C:G.76, C:G.76, C:K.77, C:T.78, C:T.78, C:A.79, C:D.303, C:Y.367, C:R.379, C:R.379 Salt bridges: C:H.19, C:K.77, C:R.405, C:R.405, C:R.405 ATP.3: 21 residues within 4Å: Chain E: A.18, H.19, I.22, G.39, F.40, V.41, G.72, P.73, G.74, T.75, G.76, K.77, T.78, A.79, D.303, Y.367, I.375, R.379, L.404, R.405, L.408 19 PLIP interactions: 19 interactions with chain E Hydrogen bonds: E:A.18, E:V.41, E:G.74, E:T.75, E:G.76, E:G.76, E:K.77, E:T.78, E:T.78, E:A.79, E:D.303, E:Y.367, E:R.379, E:R.379 Salt bridges: E:H.19, E:K.77, E:R.405, E:R.405, E:R.405 ATP.4: 21 residues within 4Å: Chain G: A.18, H.19, I.22, G.39, F.40, V.41, G.72, P.73, G.74, T.75, G.76, K.77, T.78, A.79, D.303, Y.367, I.375, R.379, L.404, R.405, L.408 22 PLIP interactions: 22 interactions with chain G Hydrogen bonds: G:A.18, G:V.41, G:G.74, G:T.75, G:T.75, G:G.76, G:G.76, G:K.77, G:T.78, G:T.78, G:T.78, G:A.79, G:D.303, G:Y.367, G:Y.367, G:R.379, G:R.379 Salt bridges: G:H.19, G:K.77, G:R.405, G:R.405, G:R.405 ATP.5: 21 residues within 4Å: Chain I: A.18, H.19, I.22, G.39, F.40, V.41, G.72, P.73, G.74, T.75, G.76, K.77, T.78, A.79, D.303, Y.367, I.375, R.379, L.404, R.405, L.408 22 PLIP interactions: 22 interactions with chain I Hydrogen bonds: I:A.18, I:V.41, I:G.74, I:T.75, I:T.75, I:G.76, I:G.76, I:K.77, I:T.78, I:T.78, I:T.78, I:A.79, I:D.303, I:Y.367, I:Y.367, I:R.379, I:R.379 Salt bridges: I:H.19, I:K.77, I:R.405, I:R.405, I:R.405 ATP.6: 21 residues within 4Å: Chain K: A.18, H.19, I.22, G.39, F.40, V.41, G.72, P.73, G.74, T.75, G.76, K.77, T.78, A.79, D.303, Y.367, I.375, R.379, L.404, R.405, L.408 22 PLIP interactions: 22 interactions with chain K Hydrogen bonds: K:A.18, K:V.41, K:G.74, K:T.75, K:T.75, K:G.76, K:G.76, K:K.77, K:T.78, K:T.78, K:T.78, K:A.79, K:D.303, K:Y.367, K:Y.367, K:R.379, K:R.379 Salt bridges: K:H.19, K:K.77, K:R.405, K:R.405, K:R.405

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lakomek, K. et al., Structural Basis for Dodecameric Assembly States and Conformational Plasticity of the Full-Length AAA+ ATPases Rvb1Rvb2. Structure (2015)

Release Date

2015-02-18

Peptides

RuvB-like 1: ACEGIK
RuvB-like 2: BDFHJL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

E
A

G
A

I
A

K
A

B
B

D
B

F
B

H
B

J
B

L
B

RuvB-like 1

RuvB-like 2

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