- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-3-3-1-1-1-1-2-2-2-2-mer
- Ligands
- 6 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
ADP.1: 18 residues within 4Å:- Chain A: A.18, H.19, H.21, G.39, F.40, V.41, P.73, G.74, T.75, G.76, K.77, T.78, A.79, Y.367, I.375, R.405
- Chain D: R.313, R.352
18 PLIP interactions:15 interactions with chain A, 3 interactions with chain D- Hydrogen bonds: A:A.18, A:V.41, A:G.74, A:T.75, A:G.76, A:K.77, A:T.78, A:T.78, A:A.79, A:Y.367, A:Y.367, D:R.352
- Salt bridges: A:H.19, A:K.77, A:R.405, A:R.405, D:R.313, D:R.313
ADP.2: 19 residues within 4Å:- Chain B: A.18, H.19, H.21, G.39, F.40, V.41, G.72, P.73, G.74, T.75, G.76, K.77, T.78, A.79, Y.367, I.375, R.405
- Chain E: R.313, R.352
15 PLIP interactions:11 interactions with chain B, 4 interactions with chain E- Hydrogen bonds: B:A.18, B:V.41, B:G.74, B:K.77, B:T.78, B:T.78, B:A.79, B:Y.367, E:R.352
- Salt bridges: B:K.77, B:R.405, B:R.405, E:R.313, E:R.313, E:R.352
ADP.3: 18 residues within 4Å:- Chain C: A.18, H.19, H.21, G.39, F.40, V.41, G.72, P.73, G.74, T.75, G.76, K.77, T.78, A.79, Y.367, I.375, L.404, R.405
15 PLIP interactions:15 interactions with chain C- Hydrogen bonds: C:A.18, C:V.41, C:G.74, C:T.75, C:G.76, C:K.77, C:T.78, C:T.78, C:A.79, C:Y.367, C:Y.367
- Salt bridges: C:H.19, C:K.77, C:R.405, C:R.405
ADP.4: 16 residues within 4Å:- Chain D: A.23, H.24, H.26, G.45, L.46, V.47, P.79, S.80, T.81, G.82, K.83, T.84, A.85, Y.361, L.398, R.399
16 PLIP interactions:16 interactions with chain D- Hydrogen bonds: D:A.23, D:V.47, D:S.80, D:T.81, D:G.82, D:K.83, D:T.84, D:T.84, D:T.84, D:A.85, D:Y.361, D:Y.361
- Salt bridges: D:H.24, D:K.83, D:R.399, D:R.399
ADP.5: 17 residues within 4Å:- Chain E: A.23, H.24, H.26, G.45, L.46, V.47, P.79, S.80, T.81, G.82, K.83, T.84, A.85, Y.361, I.369, L.398, R.399
16 PLIP interactions:16 interactions with chain E- Hydrogen bonds: E:A.23, E:V.47, E:S.80, E:T.81, E:G.82, E:K.83, E:T.84, E:T.84, E:T.84, E:A.85, E:Y.361, E:R.399
- Salt bridges: E:H.24, E:K.83, E:R.399, E:R.399
ADP.6: 18 residues within 4Å:- Chain F: A.23, H.24, H.26, I.27, G.45, L.46, V.47, P.79, S.80, T.81, G.82, K.83, T.84, A.85, Y.361, I.369, L.398, R.399
15 PLIP interactions:1 interactions with chain B, 14 interactions with chain F- Hydrogen bonds: B:E.321, F:A.23, F:V.47, F:Q.49, F:S.80, F:T.81, F:G.82, F:K.83, F:T.84, F:T.84, F:A.85
- Salt bridges: F:H.24, F:K.83, F:R.399, F:R.399
- 1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
ATP.7: 14 residues within 4Å:- Chain J: G.64, S.65, H.66, D.190, S.209, Y.210, S.211, G.235, E.264, R.268, G.691, N.692, L.694, F.695
10 PLIP interactions:10 interactions with chain J- Hydrogen bonds: J:N.63, J:S.65, J:H.66, J:S.209, J:Y.210, J:S.211, J:E.264, J:G.691
- Salt bridges: J:R.69
- pi-Cation interactions: J:R.268
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kunert, F. et al., Structural mechanism of extranucleosomal DNA readout by the INO80 complex. Sci Adv (2022)
- Release Date
- 2022-12-14
- Peptides
- RuvB-like helicase: ABC
RuvB-like helicase: DEF
Ino80: G
PAPA-1 domain-containing protein: H
YL1_C domain-containing protein: I
DASH complex subunit DAD4: J
Histone H3.2: MQ
Histone H4: NR
Histone H2A: OS
Histone H2B type 1-C/E/F/G/I: PT - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
HI
IJ
JM
MQ
QN
NR
RO
OS
SP
PT
T
SMTL ID : 8av6.1
CryoEM structure of INO80 core nucleosome complex in closed grappler conformation
RuvB-like helicase
RuvB-like helicase
Ino80
PAPA-1 domain-containing protein
YL1_C domain-containing protein
DASH complex subunit DAD4
Histone H3.2
Histone H4
Histone H2A
Histone H2B type 1-C/E/F/G/I
Related Entries With Identical Sequence
1kx3.1 | 1kx4.1 | 1kx5.1 | 1m18.1 | 1m19.1 | 1m1a.1 | 1p34.1 | 1p3a.1 | 1p3k.1 | 1p3l.1 | 1p3m.1 | 1s32.1 | 1zbb.1 | 1zla.1 | 2fj7.1 | 2io5.1 | 2nqb.1 | 2nzd.1 | 2pyo.1 | 3b6f.1 | 3b6g.1 | 3c1b.1 | 3c1c.1 | 3c9k.1 | 3c9k.2 | 3kuy.1 | 3kxb.1 | 3lel.1 | 3lel.2 | 3lja.1 more...less...3lz0.1 | 3lz1.1 | 3mgp.1 | 3mgq.1 | 3mgr.1 | 3mgs.1 | 3mnn.1 | 3mvd.1 | 3o62.1 | 3reh.1 | 3rei.1 | 3rej.1 | 3rek.1 | 3rel.1 | 3tu4.1 | 3tu4.2 | 3ut9.1 | 3uta.1 | 3utb.1 | 3x1s.1 | 3x1t.1 | 3x1u.1 | 3x1v.1 | 4h9n.1 | 4h9o.1 | 4h9p.1 | 4h9p.2 | 4h9q.1 | 4h9q.2 | 4h9r.1 | 4h9r.2 | 4j8u.1 | 4j8v.1 | 4j8v.2 | 4j8v.3 | 4j8w.1 | 4j8x.1 | 4j8x.2 | 4j8x.3 | 4qlc.1 | 4r8p.1 | 4wu8.1 | 4wu9.1 | 4wvy.1 | 4wvy.2 | 4wvy.3 | 4ww4.1 | 4ww4.2 | 4ww4.3 | 4xuj.1 | 5bnv.1 | 5bnx.1 | 5bo0.1 | 5bs7.1 | 5bsa.1 | 5cp6.1 | 5dnm.1 | 5dnn.1 | 5gsu.1 | 5gt0.1 | 5gt3.1 | 5hq2.1 | 5ja4.1 | 5kdm.1 | 5nl0.1 | 5nl0.2 | 5oxv.1 | 5oy7.1 | 5x0y.1 | 5xf6.1 | 5z3l.1 | 5z3o.1 | 5z3u.1 | 5z3v.1 | 6esf.1 | 6esg.1 | 6esh.1 | 6esi.1 | 6fhs.1 | 6fml.1 | 6iro.1 | 6jyl.1 | 6k1p.1 | 6kiu.1 | 6kiv.1 | 6kiw.1 | 6kix.1 | 6kiz.1 | 6nj9.1 | 6nn6.1 | 6nog.1 | 6nqa.1 | 6r1u.1 | 6r25.1 | 6s01.1 | 6t9l.1 | 6tda.1 | 6ugm.1 | 6uh5.1 | 6uxw.1 | 6ven.1 | 6vyp.1 | 6vyp.2 | 6wz5.1 | 6wz9.1 | 6x0n.1 | 6x59.1 | 6x5a.1 | 6xjd.1 | 7a08.1 | 7at8.1 | 7bwd.1 | 7ciz.1 | 7ciz.2 | 7ciz.3 | 7cj0.1 | 7cj0.2 | 7cro.1 | 7crp.1 | 7crq.1 | 7crr.1 | 7e8d.1 | 7e8i.1 | 7eg6.1 | 7egp.1 | 7enn.1 | 7jo9.1 | 7joa.1 | 7jzv.1 | 7oh9.1 | 7oha.1 | 7ohb.1 | 7ohc.1 | 7swy.1 | 7tan.1 | 7tn2.1 | 7u50.1 | 7u51.1 | 7u52.1 | 7u53.1 | 7uv9.1 | 7v1m.1 | 7v1m.2 | 7xyg.1 | 7y8r.1 | 7yi1.1 | 7yi4.1 | 7yi5.1 | 7zs9.1 | 7zsa.1 | 7zsb.1 | 8a5p.1 | 8a5q.1 | 8atf.1 | 8cbn.1 | 8cbq.1 | 8ceo.1 | 8cww.1 | 8cze.1 | 8f86.1 | 8g86.1 | 8g88.1 | 8g8b.1 | 8g8g.1 | 8gui.1 | 8guj.1 | 8guk.1 | 8hag.1 | 8hah.1 | 8hai.1 | 8haj.1 | 8hak.1 | 8hal.1 | 8ham.1 | 8han.1 | 8hxy.1 | 8hxz.1 | 8hy0.1 | 8ihm.1 | 8iht.1 | 8jbx.1 | 8jcc.1 | 8jcd.1 | 8jho.1 | 8kd2.1 | 8kd3.1 | 8kd4.1 | 8kd5.1 | 8kd6.1 | 8kd7.1 | 8oo7.1 | 8ooa.1 | 8ooc.1 | 8oof.1 | 8ook.1 | 8oop.1 | 8oor.1 | 8oos.1 | 8oot.1 | 8pc5.1 | 8pc6.1 | 8peo.1 | 8pep.1 | 8pp6.1 | 8pp7.1 | 8qzm.1 | 8siy.1 | 8t3t.1 | 8t3w.1 | 8t3y.1 | 8uxq.1 | 8v4y.1 | 8v6v.1 | 8v7l.1 | 8vws.1 | 8vwt.1 | 8vwu.1 | 8vwv.1 | 8yv8.1 | 9eoz.1 | 9ipu.1