SMTL ID : 4x6n.1

FACTOR XIA IN COMPLEX WITH THE INHIBITOR 1-{(1S)-1-[4-(3-amino-1H-indazol-6-yl)-5-chloro-1H-imidazol-2-yl]-2-phenylethyl}-3-[5-chloro-2-(1H-tetrazol-1-yl)benzyl]urea

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-oligomer

Ligands

1 x 3Y5: 1-{(1S)-1-[4-(3-amino-1H-indazol-6-yl)-5-chloro-1H-imidazol-2-yl]-2-phenylethyl}-3-[5-chloro-2-(1H-tetrazol-1-yl)benzyl]urea(Non-covalent)

3Y5.1: 29 residues within 4Å: Chain A: R.26, H.27, L.28, C.29, H.44, C.45, Y.134, L.137, I.141, D.182, A.183, C.184, K.185, G.186, D.187, S.188, T.206, S.207, W.208, G.209, E.210, G.211, C.212, G.219, V.220, Y.221 Ligands: EDO.3, EDO.7, EDO.8 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:L.28, A:Y.134, A:I.141, A:T.206 Hydrogen bonds: A:R.26, A:H.27, A:Y.134, A:C.184, A:G.186, A:D.187, A:S.188, A:S.188 Water bridges: A:H.27, A:H.44, A:I.141, A:I.141, A:S.207

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: K.160, R.161, R.177 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:K.160, A:R.161, A:R.177

11 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 4 residues within 4Å: Chain A: K.185 Ligands: 3Y5.1, EDO.7, EDO.8 1 PLIP interactions: 1 interactions with chain A Water bridges: A:H.44 EDO.4: 5 residues within 4Å: Chain A: N.36, T.102, V.103, G.104, Y.105 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.36, A:Y.105 Water bridges: A:Y.105 EDO.5: 2 residues within 4Å: Chain A: R.9, L.62 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.9 EDO.6: 8 residues within 4Å: Chain A: R.9, G.10, E.11, W.12, P.13, I.61, L.62, L.145 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.10, A:W.12, A:W.12 EDO.7: 7 residues within 4Å: Chain A: L.137, G.209, E.210, G.211 Ligands: 3Y5.1, EDO.3, EDO.8 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.209, A:G.211 EDO.8: 7 residues within 4Å: Chain A: E.89, W.208, G.209, E.210 Ligands: 3Y5.1, EDO.3, EDO.7 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.210 Water bridges: A:G.209 EDO.9: 2 residues within 4Å: Chain A: T.168, H.169 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.169 EDO.10: 6 residues within 4Å: Chain A: S.90, G.91, Y.92, T.168, K.170, M.171 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.90, A:Y.92, A:T.168 EDO.11: 5 residues within 4Å: Chain A: P.111, I.112, C.113, V.199, W.200 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:C.113, A:W.200 EDO.12: 5 residues within 4Å: Chain A: H.44, Y.85, M.87, A.88, E.89 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Y.85, A:A.88, A:E.89, A:E.89, A:E.89 Water bridges: A:Y.85 EDO.13: 4 residues within 4Å: Chain A: E.11, W.12, W.128, K.147 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.11 Water bridges: A:W.200

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pinto, D.J. et al., Structure-based design of inhibitors of coagulation factor XIa with novel P1 moieties. Bioorg.Med.Chem.Lett. (2015)

Release Date

2015-02-18

Peptides

Coagulation factor XI, light chain: A
cleaved peptide: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
H

Coagulation factor XI, light chain

cleaved peptide

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