SMTL ID : 5e2p.1

FACTOR XIA IN COMPLEX WITH THE INHIBITOR N-[(1S)-1-benzyl-2-[2-[5-chloro-2-(tetrazol-1-yl)phenyl]ethylamino]-2-oxo-ethyl]-4-hydroxy-2-oxo-1H-quinoline-6-carboxamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.11 Å

Oligo State

monomer

Ligands

1 x 7P0: N-[(1S)-1-benzyl-2-[2-[5-chloro-2-(tetrazol-1-yl)phenyl]ethylamino]-2-oxo-ethyl]-4-hydroxy-2-oxo-1H-quinoline-6-carboxamide(Non-covalent)

7P0.1: 29 residues within 4Å: Chain A: R.26, H.27, L.28, C.29, H.44, C.45, Y.134, L.137, I.141, D.182, A.183, C.184, K.185, G.186, D.187, S.188, T.206, S.207, W.208, G.209, E.210, G.211, C.212, G.219, V.220, Y.221 Ligands: EDO.3, EDO.7, EDO.10 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:L.28, A:I.141, A:T.206 Hydrogen bonds: A:H.27, A:K.185, A:G.186, A:D.187, A:S.188 Water bridges: A:H.27, A:S.188, A:G.209 pi-Cation interactions: A:R.26

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 2 residues within 4Å: Chain A: R.161, R.177 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.161, A:R.177

10 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 5 residues within 4Å: Chain A: K.185 Ligands: 7P0.1, EDO.7, EDO.8, EDO.10 No protein-ligand interaction detected (PLIP) EDO.4: 4 residues within 4Å: Chain A: N.36, V.103, G.104, Y.105 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.36, A:Y.105 EDO.5: 2 residues within 4Å: Chain A: R.9, L.62 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.9 Water bridges: A:N.63 EDO.6: 9 residues within 4Å: Chain A: R.9, G.10, W.12, P.13, G.60, I.61, L.62, S.108, L.145 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.10, A:S.108 Water bridges: A:G.60 EDO.7: 8 residues within 4Å: Chain A: L.137, K.185, G.209, E.210, G.211 Ligands: 7P0.1, EDO.3, EDO.8 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.209, A:G.211 EDO.8: 7 residues within 4Å: Chain A: E.89, H.165, W.208, G.209, E.210 Ligands: EDO.3, EDO.7 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.165 Water bridges: A:G.209 EDO.9: 2 residues within 4Å: Chain A: T.168, H.169 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.169 EDO.10: 7 residues within 4Å: Chain A: H.44, A.88, S.207, W.208 Ligands: 7P0.1, EDO.3, EDO.12 No protein-ligand interaction detected (PLIP) EDO.11: 8 residues within 4Å: Chain A: V.153, E.157, R.161, G.175, Y.176, R.177, E.216, P.218 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.157, A:E.157, A:R.161 Water bridges: A:Y.176, A:R.217 EDO.12: 6 residues within 4Å: Chain A: H.44, Y.85, M.87, A.88, E.89 Ligands: EDO.10 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:A.88, A:E.89, A:E.89, A:E.89

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Smith, L.M. et al., Novel phenylalanine derived diamides as Factor XIa inhibitors. Bioorg.Med.Chem.Lett. (2016)

Release Date

2015-12-09

Peptides

Coagulation factor XIa light chain: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Coagulation factor XIa light chain

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