- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.12 Å
- Oligo State
- monomer
- Ligands
- 1 x 9FD: methyl [(4S,8S)-8-({(2E)-3-[5-chloro-2-(1H-tetrazol-1-yl)phenyl]prop-2-enoyl}amino)-4-methyl-2-oxo-1,3,4,5,6,7,8,10-octahydro-2H-12,9-(azeno)-1,10-benzodiazacyclotetradecin-15-yl]carbamate(Non-covalent)
- 2 x SO4: SULFATE ION(Non-functional Binders)
SO4.2: 10 residues within 4Å:- Chain A: S.7, V.8, R.9, G.10, E.11, W.12, P.13, I.61, L.62, L.145
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:G.10, A:E.11, A:W.12, A:W.12, A:I.61
- Water bridges: A:I.61
SO4.3: 3 residues within 4Å:- Chain A: K.160, R.161, R.177
3 PLIP interactions:3 interactions with chain A- Salt bridges: A:K.160, A:R.161, A:R.177
- 15 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.4: 5 residues within 4Å:- Chain A: K.185
- Ligands: 9FD.1, EDO.7, EDO.8, EDO.16
3 PLIP interactions:3 interactions with chain A- Water bridges: A:K.185, A:K.185, A:K.185
EDO.5: 5 residues within 4Å:- Chain A: N.36, T.102, V.103, G.104, Y.105
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:N.36, A:Y.105
- Water bridges: A:Y.105
EDO.6: 2 residues within 4Å:- Chain A: R.9, L.62
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.9
- Water bridges: A:N.63
EDO.7: 7 residues within 4Å:- Chain A: L.137, G.209, E.210, G.211
- Ligands: 9FD.1, EDO.4, EDO.8
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:G.209, A:G.211
- Water bridges: A:K.185
EDO.8: 7 residues within 4Å:- Chain A: E.89, W.208, G.209, E.210
- Ligands: 9FD.1, EDO.4, EDO.7
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:E.210
- Water bridges: A:G.209, A:G.209
EDO.9: 2 residues within 4Å:- Chain A: T.168, H.169
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:H.169
EDO.10: 3 residues within 4Å:- Chain A: Q.25, I.67, K.68
1 PLIP interactions:1 interactions with chain A- Water bridges: A:H.19
EDO.11: 9 residues within 4Å:- Chain A: V.153, E.157, R.161, G.175, Y.176, R.177, E.216, R.217, P.218
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:E.157, A:E.157, A:R.161
- Water bridges: A:Y.176, A:R.217
EDO.12: 5 residues within 4Å:- Chain A: N.155, H.169, M.171, I.172, N.223
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:H.169
- Water bridges: A:V.153, A:V.153, A:N.155, A:N.155, A:C.173
EDO.13: 6 residues within 4Å:- Chain A: S.90, G.91, Y.92, T.168, K.170, M.171
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:S.90, A:Y.92, A:T.168
- Water bridges: A:Y.92
EDO.14: 4 residues within 4Å:- Chain A: E.11, W.12, W.128, K.147
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:K.147
EDO.15: 6 residues within 4Å:- Chain A: I.34, G.35, L.114, L.232, T.235, Q.236
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:T.235, A:Q.236
EDO.16: 2 residues within 4Å:- Ligands: 9FD.1, EDO.4
1 PLIP interactions:1 interactions with chain A- Water bridges: A:K.185
EDO.17: 6 residues within 4Å:- Chain A: G.10, E.11, P.13, W.14, R.110, W.200
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.110, A:R.110
EDO.18: 7 residues within 4Å:- Chain A: W.14, R.110, P.111, I.112, C.113, V.199, W.200
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:P.111, A:C.113, A:W.200
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Corte, J.R. et al., Macrocyclic inhibitors of Factor XIa: Discovery of alkyl-substituted macrocyclic amide linkers with improved potency. Bioorg. Med. Chem. Lett. (2017)
- Release Date
- 2017-07-12
- Peptides
- Coagulation factor XI: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.12 Å
- Oligo State
- monomer
- Ligands
- 1 x 9FD: methyl [(4S,8S)-8-({(2E)-3-[5-chloro-2-(1H-tetrazol-1-yl)phenyl]prop-2-enoyl}amino)-4-methyl-2-oxo-1,3,4,5,6,7,8,10-octahydro-2H-12,9-(azeno)-1,10-benzodiazacyclotetradecin-15-yl]carbamate(Non-covalent)
- 2 x SO4: SULFATE ION(Non-functional Binders)
- 15 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Corte, J.R. et al., Macrocyclic inhibitors of Factor XIa: Discovery of alkyl-substituted macrocyclic amide linkers with improved potency. Bioorg. Med. Chem. Lett. (2017)
- Release Date
- 2017-07-12
- Peptides
- Coagulation factor XI: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A