- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.35 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x B12: COBALAMIN(Non-covalent)
- 1 x 5AD: 5'-DEOXYADENOSINE(Non-covalent)
- 2 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)
GDP.3: 17 residues within 4Å:- Chain A: G.239, A.240, G.241, K.242, S.243, S.244, R.285, E.330, N.377, K.378, D.380, Q.415, A.416, S.417, E.993, N.1112
- Ligands: MG.4
20 PLIP interactions:20 interactions with chain A- Hydrogen bonds: A:G.239, A:A.240, A:G.241, A:K.242, A:S.243, A:S.244, A:S.244, A:N.377, A:K.378, A:K.378, A:D.380, A:A.416, A:S.417, A:S.417, A:E.993, A:N.1112
- Salt bridges: A:K.242, A:R.285, A:D.380, A:E.993
GDP.8: 18 residues within 4Å:- Chain B: G.239, A.240, G.241, K.242, S.243, S.244, R.285, E.330, N.377, K.378, D.380, R.381, Q.415, A.416, S.417, E.993, N.1112
- Ligands: MG.9
19 PLIP interactions:19 interactions with chain B- Hydrogen bonds: B:G.239, B:A.240, B:G.241, B:K.242, B:S.243, B:S.244, B:S.244, B:N.377, B:K.378, B:K.378, B:A.416, B:S.417, B:S.417, B:N.1112, B:N.1112
- Salt bridges: B:K.242, B:R.285, B:D.380, B:E.993
- 4 x MG: MAGNESIUM ION(Non-covalent)
MG.4: 5 residues within 4Å:- Chain A: S.243, D.282, E.330
- Ligands: GDP.3, MG.5
3 PLIP interactions:3 interactions with chain A- Metal complexes: A:S.243, A:D.282, A:E.330
MG.5: 6 residues within 4Å:- Chain A: I.268, D.269, D.282, E.330, T.331
- Ligands: MG.4
3 PLIP interactions:3 interactions with chain A- Metal complexes: A:D.269, A:D.282, A:E.330
MG.9: 5 residues within 4Å:- Chain B: S.243, D.282, E.330
- Ligands: GDP.8, MG.10
3 PLIP interactions:3 interactions with chain B- Metal complexes: B:S.243, B:D.282, B:E.330
MG.10: 6 residues within 4Å:- Chain B: I.268, D.269, D.282, E.330, T.331
- Ligands: MG.9
5 PLIP interactions:5 interactions with chain B- Metal complexes: B:I.268, B:D.269, B:D.282, B:E.330, B:T.331
- 1 x ACT: ACETATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Jost, M. et al., Visualization of a radical B12 enzyme with its G-protein chaperone. Proc.Natl.Acad.Sci.USA (2015)
- Release Date
- 2015-02-11
- Peptides
- Isobutyryl-CoA mutase fused: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.35 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x B12: COBALAMIN(Non-covalent)
- 1 x 5AD: 5'-DEOXYADENOSINE(Non-covalent)
- 2 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)
- 4 x MG: MAGNESIUM ION(Non-covalent)
- 1 x ACT: ACETATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Jost, M. et al., Visualization of a radical B12 enzyme with its G-protein chaperone. Proc.Natl.Acad.Sci.USA (2015)
- Release Date
- 2015-02-11
- Peptides
- Isobutyryl-CoA mutase fused: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B