SMTL ID : 4xep.1

Crystal Structure of F222 form of E112A/H234A Mutant of Stationary Phase Survival Protein (SurE) from Salmonella typhimurium

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-dimer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 3 residues within 4Å: Chain A: D.22, D.23, N.106 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.22, A:D.23, H2O.7, H2O.7, H2O.13 MG.7: 3 residues within 4Å: Chain B: D.22, D.23, N.106 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:D.22, B:D.23, H2O.21, H2O.21, H2O.27

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 5 residues within 4Å: Chain A: P.109, N.110, D.114, Y.117, S.118 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:P.109, A:N.110, A:N.110 Water bridges: A:D.114, A:G.119 PO4.8: 5 residues within 4Å: Chain B: P.109, N.110, D.114, Y.117, S.118 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:P.109, B:N.110, B:N.110 Water bridges: B:D.114, B:G.119

8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 5 residues within 4Å: Chain A: V.90, N.91, A.92, M.94, R.97 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:M.94 EDO.4: 6 residues within 4Å: Chain A: L.111, N.140, K.219, F.228, V.231, D.232 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.219, A:F.228 Water bridges: A:N.140, A:N.140, A:K.219 EDO.5: 2 residues within 4Å: Chain A: R.186, Y.235 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.186, A:Y.235 Water bridges: A:Y.235, A:Y.235 EDO.6: 5 residues within 4Å: Chain A: A.196, I.213, G.214, P.215, P.216 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.214 EDO.9: 5 residues within 4Å: Chain B: V.90, N.91, A.92, M.94, R.97 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:M.94 EDO.10: 6 residues within 4Å: Chain B: L.111, N.140, K.219, F.228, V.231, D.232 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:K.219, B:F.228 Water bridges: B:N.140, B:N.140, B:K.219 EDO.11: 2 residues within 4Å: Chain B: R.186, Y.235 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.186, B:Y.235 Water bridges: B:Y.235, B:Y.235 EDO.12: 5 residues within 4Å: Chain B: A.196, I.213, G.214, P.215, P.216 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:G.214

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mathiharan, Y.K. et al., Insights into stabilizing interactions in the distorted domain-swapped dimer of Salmonella typhimurium survival protein. Acta Crystallogr.,Sect.D (2015)

Release Date

2015-09-09

Peptides

5'/3'-nucleotidase SurE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

5'/3'-nucleotidase SurE

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