SMTL ID : 4xsd.1 (1 other biounit)

Complex structure of thymidylate synthase from varicella zoster virus with a dUMP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

homo-dimer

Ligands

2 x UMP: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE(Non-covalent)

UMP.1: 14 residues within 4Å: Chain A: R.54, C.199, H.200, Q.218, R.219, S.220, G.221, D.222, G.226, N.230, H.260, Y.262 Chain B: R.179, R.180 12 PLIP interactions: 2 interactions with chain B, 10 interactions with chain A Salt bridges: B:R.179, B:R.180, A:R.54, A:R.219 Hydrogen bonds: A:Q.218, A:S.220, A:D.222, A:G.226, A:G.226, A:N.230, A:H.260, A:Y.262 UMP.2: 12 residues within 4Å: Chain A: R.179, R.180 Chain B: C.199, Q.218, R.219, S.220, G.221, D.222, G.226, N.230, H.260, Y.262 11 PLIP interactions: 8 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:Q.218, B:S.220, B:D.222, B:G.226, B:N.230, A:R.179 Water bridges: B:G.226, B:G.226 Salt bridges: B:R.219, A:R.179, A:R.180

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hew, K. et al., Structure of the Varicella Zoster Virus Thymidylate Synthase Establishes Functional and Structural Similarities as the Human Enzyme and Potentiates Itself as a Target of Brivudine. Plos One (2015)

Release Date

2015-12-16

Peptides

Thymidylate synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Thymidylate synthase

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