SMTL ID : 4xst.2 (1 other biounit)

Structure of the endoglycosidase-H treated L1-CR domains of the human insulin receptor in complex with residues 697-719 of the human insulin receptor (A-isoform)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

hetero-6-6-mer

Ligands

6 x NAG- FUC: alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-FUC.1: 2 residues within 4Å: Chain A: D.234, N.255 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.234, A:N.255 NAG-FUC.7: 2 residues within 4Å: Chain C: D.234, N.255 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:D.234, C:N.255 NAG-FUC.13: 2 residues within 4Å: Chain E: D.234, N.255 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:D.234, E:N.255 NAG-FUC.19: 2 residues within 4Å: Chain G: D.234, N.255 1 PLIP interactions: 1 interactions with chain G Hydrogen bonds: G:N.255 NAG-FUC.25: 2 residues within 4Å: Chain I: D.234, N.255 1 PLIP interactions: 1 interactions with chain I Hydrogen bonds: I:N.255 NAG-FUC.31: 2 residues within 4Å: Chain K: D.234, N.255 1 PLIP interactions: 1 interactions with chain K Hydrogen bonds: K:N.255

18 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 4 residues within 4Å: Chain A: E.6, E.22, E.24, N.25 Ligand excluded by PLIP NAG.3: 6 residues within 4Å: Chain A: N.108, M.110, K.190, N.215, C.216, S.217 Ligand excluded by PLIP NAG.4: 10 residues within 4Å: Chain A: N.111, T.113, S.134, R.135, I.136, L.137, D.138, S.198, L.213, R.229 Ligand excluded by PLIP NAG.8: 4 residues within 4Å: Chain C: E.6, E.22, E.24, N.25 Ligand excluded by PLIP NAG.9: 6 residues within 4Å: Chain C: N.108, M.110, K.190, N.215, C.216, S.217 Ligand excluded by PLIP NAG.10: 10 residues within 4Å: Chain C: N.111, T.113, S.134, R.135, I.136, L.137, D.138, S.198, L.213, R.229 Ligand excluded by PLIP NAG.14: 4 residues within 4Å: Chain E: E.6, E.22, E.24, N.25 Ligand excluded by PLIP NAG.15: 6 residues within 4Å: Chain E: N.108, M.110, K.190, N.215, C.216, S.217 Ligand excluded by PLIP NAG.16: 10 residues within 4Å: Chain E: N.111, T.113, S.134, R.135, I.136, L.137, D.138, S.198, L.213, R.229 Ligand excluded by PLIP NAG.20: 4 residues within 4Å: Chain G: E.6, E.22, E.24, N.25 Ligand excluded by PLIP NAG.21: 6 residues within 4Å: Chain G: N.108, M.110, K.190, N.215, C.216, S.217 Ligand excluded by PLIP NAG.22: 10 residues within 4Å: Chain G: N.111, T.113, S.134, R.135, I.136, L.137, D.138, S.198, L.213, R.229 Ligand excluded by PLIP NAG.26: 4 residues within 4Å: Chain I: E.6, E.22, E.24, N.25 Ligand excluded by PLIP NAG.27: 6 residues within 4Å: Chain I: N.108, M.110, K.190, N.215, C.216, S.217 Ligand excluded by PLIP NAG.28: 10 residues within 4Å: Chain I: N.111, T.113, S.134, R.135, I.136, L.137, D.138, S.198, L.213, R.229 Ligand excluded by PLIP NAG.32: 4 residues within 4Å: Chain K: E.6, E.22, E.24, N.25 Ligand excluded by PLIP NAG.33: 6 residues within 4Å: Chain K: N.108, M.110, K.190, N.215, C.216, S.217 Ligand excluded by PLIP NAG.34: 10 residues within 4Å: Chain K: N.111, T.113, S.134, R.135, I.136, L.137, D.138, S.198, L.213, R.229 Ligand excluded by PLIP

12 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 4 residues within 4Å: Chain A: R.135, T.172, R.181 Chain E: H.209 5 PLIP interactions: 1 interactions with chain E, 4 interactions with chain A Salt bridges: E:H.209, A:R.181 Hydrogen bonds: A:R.135, A:T.172, A:T.172 SO4.6: 8 residues within 4Å: Chain A: S.85, R.86, L.87, F.89, R.114 Chain K: H.280, N.281, Y.292 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain K Hydrogen bonds: A:L.87, K:N.281 Salt bridges: A:R.114, K:H.280 SO4.11: 4 residues within 4Å: Chain A: H.209 Chain C: R.135, T.172, R.181 5 PLIP interactions: 4 interactions with chain C, 1 interactions with chain A Hydrogen bonds: C:R.135, C:T.172, C:T.172 Salt bridges: C:R.181, A:H.209 SO4.12: 8 residues within 4Å: Chain C: S.85, R.86, L.87, F.89, R.114 Chain I: H.280, N.281, Y.292 4 PLIP interactions: 2 interactions with chain I, 2 interactions with chain C Hydrogen bonds: I:N.281, C:L.87 Salt bridges: I:H.280, C:R.114 SO4.17: 4 residues within 4Å: Chain C: H.209 Chain E: R.135, T.172, R.181 5 PLIP interactions: 4 interactions with chain E, 1 interactions with chain C Hydrogen bonds: E:R.135, E:T.172, E:T.172 Salt bridges: E:R.181, C:H.209 SO4.18: 8 residues within 4Å: Chain E: S.85, R.86, L.87, F.89, R.114 Chain G: H.280, N.281, Y.292 4 PLIP interactions: 2 interactions with chain E, 2 interactions with chain G Hydrogen bonds: E:L.87, G:N.281 Salt bridges: E:R.114, G:H.280 SO4.23: 4 residues within 4Å: Chain G: R.135, T.172, R.181 Chain K: H.209 5 PLIP interactions: 1 interactions with chain K, 4 interactions with chain G Salt bridges: K:H.209, G:R.181 Hydrogen bonds: G:R.135, G:T.172, G:T.172 SO4.24: 8 residues within 4Å: Chain E: H.280, N.281, Y.292 Chain G: S.85, R.86, L.87, F.89, R.114 4 PLIP interactions: 2 interactions with chain G, 2 interactions with chain E Hydrogen bonds: G:L.87, E:N.281 Salt bridges: G:R.114, E:H.280 SO4.29: 4 residues within 4Å: Chain G: H.209 Chain I: R.135, T.172, R.181 5 PLIP interactions: 4 interactions with chain I, 1 interactions with chain G Hydrogen bonds: I:R.135, I:T.172, I:T.172 Salt bridges: I:R.181, G:H.209 SO4.30: 8 residues within 4Å: Chain C: H.280, N.281, Y.292 Chain I: S.85, R.86, L.87, F.89, R.114 4 PLIP interactions: 2 interactions with chain I, 2 interactions with chain C Hydrogen bonds: I:L.87, C:N.281 Salt bridges: I:R.114, C:H.280 SO4.35: 4 residues within 4Å: Chain I: H.209 Chain K: R.135, T.172, R.181 5 PLIP interactions: 1 interactions with chain I, 4 interactions with chain K Salt bridges: I:H.209, K:R.181 Hydrogen bonds: K:R.135, K:T.172, K:T.172 SO4.36: 8 residues within 4Å: Chain A: H.280, N.281, Y.292 Chain K: S.85, R.86, L.87, F.89, R.114 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain K Hydrogen bonds: A:N.281, K:L.87 Salt bridges: A:H.280, K:R.114

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Menting, J.G. et al., Structural Congruency of Ligand Binding to the Insulin and Insulin/Type 1 Insulin-like Growth Factor Hybrid Receptors. Structure (2015)

Release Date

2015-06-10

Peptides

Insulin receptor: ACEGIK
Insulin receptor: BDFHJL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

C
E

E
E

G
E

I
E

K
E

B
F

D
F

F
F

H
F

J
F

L
F

Insulin receptor

Insulin receptor

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