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SMTL ID : 4oga.1

Insulin in complex with Site 1 of the human insulin receptor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.50 Å

Oligo State

hetero-1-1-1-1-1-1-mer

Ligands

1 x NAG- NAG- BMA- MAN: alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN.1:

12 residues within 4Å:

Chain E: N.111, T.113, R.114, S.134, R.135, I.136, L.137, D.138, S.198, L.213, R.229, D.250

1 PLIP interactions:

1 interactions with chain E

Hydrogen bonds: E:D.250, E:D.138

1 x NAG- NAG- BMA- FUC: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-FUC.2:

2 residues within 4Å:

Chain E: C.253, N.255

No protein-ligand interaction detected (PLIP)

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3:	3 residues within 4Å: Chain B: R.22 Chain E: N.16, T.18 No protein-ligand interaction detected (PLIP)
NAG.4:	4 residues within 4Å: Chain E: H.21, E.22, E.24, N.25 4 PLIP interactions: 4 interactions with chain E Hydrophobic interactions: E:E.24 Hydrogen bonds: E:E.24, E:E.24, E:N.25
NAG.5:	6 residues within 4Å: Chain E: N.108, K.190, N.215, C.216, S.217, V.226 3 PLIP interactions: 3 interactions with chain E Hydrophobic interactions: E:K.190 Hydrogen bonds: E:N.108, E:N.108

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Menting, J.G. et al., Protective hinge in insulin opens to enable its receptor engagement. Proc.Natl.Acad.Sci.USA (2014)

Release Date

2014-08-27

Peptides

Insulin A chain: A
Insulin B chain: B
monoclonal antibody fab 83-7 fragment - heavy chain: C
monoclonal antibody fab 83-7 fragment - light chain: D
Insulin receptor domains L1-CR: E
Insulin receptor alpha-CT peptide: F

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Insulin A chain

Insulin B chain

monoclonal antibody fab 83-7 fragment - heavy chain

monoclonal antibody fab 83-7 fragment - light chain

Insulin receptor domains L1-CR

Insulin receptor alpha-CT peptide

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1a7f.1 | 1ai0.1 | 1aiy.1 | 1b17.1 | 1b17.2 | 1b17.3 | 1b18.1 | 1b18.2 | 1b18.3 | 1b19.1 | 1b19.2 | 1b19.3 | 1b2a.1 | 1b2a.2 | 1b2a.3 | 1b2b.1 | 1b2b.2 | 1b2b.3 | 1b2c.1 | 1b2c.2 | 1b2d.1 | 1b2d.2 | 1b2d.3 | 1b2e.1 | 1b2e.2 | 1b2e.3 | 1b2f.1 | 1b2f.2 | 1b2g.1 | 1b9e.1 more...less...

1b9e.2 | 1ben.1 | 1ben.2 | 1ben.3 | 1ben.4 | 1ben.5 | 1ben.6 | 1ben.7 | 1ben.8 | 1ben.9 | 1ben.10 | 1ben.11 | 1ben.12 | 1ben.13 | 1bzv.1 | 1dei.1 | 1dei.2 | 1dei.3 | 1ev3.1 | 1ev6.1 | 1evr.1 | 1fu2.1 | 1fu2.2 | 1fu2.3 | 1fu2.4 | 1fub.1 | 1fub.2 | 1g7a.1 | 1g7a.2 | 1g7b.1 | 1g7b.2 | 1guj.1 | 1guj.2 | 1hiq.1 | 1his.1 | 1hit.1 | 1hls.1 | 1htv.1 | 1hui.1 | 1iza.1 | 1iza.2 | 1iza.3 | 1iza.4 | 1izb.1 | 1izb.2 | 1izb.3 | 1izb.4 | 1izb.5 | 1izb.6 | 1izb.7 | 1izb.8 | 1j73.1 | 1jca.1 | 1jca.2 | 1jca.3 | 1jco.1 | 1kmf.1 | 1lph.1 | 1lph.2 | 1lph.3 | 1lph.4 | 1lph.5 | 1lph.6 | 1lph.7 | 1lph.8 | 1lph.9 | 1m5a.1 | 1mhi.1 | 1mhj.1 | 1mpj.1 | 1mpj.2 | 1mpj.3 | 1mpj.4 | 1mpj.5 | 1mpj.6 | 1mpj.7 | 1mso.1 | 1os3.1 | 1os4.1 | 1q4v.1 | 1q4v.2 | 1q4v.3 | 1qiy.1 | 1qiz.1 | 1qj0.1 | 1rwe.1 | 1rwe.2 | 1rwe.3 | 1sdb.1 | 1sf1.1 | 1sjt.1 | 1t1k.1 | 1t1p.1 | 1t1q.1 | 1trz.1 | 1trz.2 | 1trz.3 | 1trz.4 | 1trz.5 | 1trz.6 | 1trz.7 | 1trz.8 | 1trz.9 | 1tyl.1 | 1tyl.2 | 1tyl.3 | 1tyl.4 | 1tyl.5 | 1tyl.6 | 1tyl.7 | 1tyl.8 | 1tym.1 | 1tym.2 | 1tym.3 | 1tym.4 | 1tym.5 | 1tym.6 | 1tym.7 | 1uz9.1 | 1w8p.1 | 1wav.1 | 1wav.2 | 1wav.3 | 1wav.4 | 1wav.5 | 1wav.6 | 1wav.7 | 1wav.8 | 1wav.9 | 1wav.10 | 1wav.11 | 1wav.12 | 1xda.1 | 1xda.2 | 1xda.3 | 1xda.4 | 1xda.5 | 1xda.6 | 1xda.7 | 1xda.8 | 1xda.9 | 1xda.10 | 1xda.11 | 1xda.12 | 1xgl.1 | 1xw7.1 | 1xw7.2 | 1xw7.3 | 1xw7.4 | 1zeg.1 | 1zeg.2 | 1zeg.3 | 1zeg.4 | 1zeg.5 | 1zeg.6 | 1zeg.7 | 1zeg.8 | 1zeg.9 | 1zeh.1 | 1zeh.2 | 1zeh.3 | 1zeh.4 | 1zeh.5 | 1zeh.6 | 1zeh.7 | 1zni.1 | 1zni.2 | 1zni.3 | 1zni.4 | 1zni.5 | 1zni.6 | 1zni.7 | 1zni.8 | 1znj.1 | 2aiy.1 | 2c8q.1 | 2c8r.1 | 2ceu.1 | 2efa.1 | 2efa.2 | 2g4m.1 | 2g4m.2 | 2g54.1 | 2g54.2 | 2g56.1 | 2g56.2 | 2h67.1 | 2hh4.1 | 2hho.1 | 2hiu.1 | 2jmn.1 | 2jv1.1 | 2k91.1 | 2k9r.1 | 2kjj.1 | 2kju.1 | 2kqq.1 | 2l1y.1 | 2m1d.1 | 2m1e.1 | 2m2m.1 | 2m2n.1 | 2m2o.1 | 2m2p.1 | 2mli.1 | 2mpg.1 | 2mpi.1 | 2mvc.1 | 2mvd.1 | 2n2v.1 | 2n2w.1 | 2n2x.1 | 2oly.1 | 2olz.1 | 2om0.1 | 2om0.2 | 2om0.3 | 2om1.1 | 2om1.2 | 2om1.3 | 2omg.1 | 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Background

Transparent

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