SMTL ID : 4xua.1

Crystal Structure of the bromodomain of human BAZ2B in complex with E11919 BAZ2-ICR analogue

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: P.37, V.38, N.39, L.40 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.40 Water bridges: A:P.37 EDO.2: 3 residues within 4Å: Chain A: H.28, E.29, Y.105 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.29, A:Y.105, A:Y.105 EDO.3: 4 residues within 4Å: Chain A: D.83, E.86, T.87, R.103 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.87, A:T.87, A:T.87 Water bridges: A:D.83, A:R.103 EDO.4: 5 residues within 4Å: Chain A: R.9, K.13, L.17, T.113, F.114 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.9, A:F.114

1 x 43C: 4-{1-[2-(4-methyl-1H-1,2,3-triazol-1-yl)ethyl]-4-phenyl-1H-imidazol-5-yl}benzonitrile(Non-covalent)

43C.5: 11 residues within 4Å: Chain A: W.32, P.33, L.35, L.36, P.37, V.38, N.39, L.42, V.43, N.89, I.95 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:V.38, A:I.95 Hydrogen bonds: A:L.35, A:L.36, A:N.39

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Drouin, L. et al., Structure Enabled Design of BAZ2-ICR, A Chemical Probe Targeting the Bromodomains of BAZ2A and BAZ2B. J.Med.Chem. (2015)

Release Date

2015-03-11

Peptides

Bromodomain adjacent to zinc finger domain protein 2B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain adjacent to zinc finger domain protein 2B

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