SMTL ID : 4xub.1

Crystal Structure of the bromodomain of human BAZ2B in complex with BAZ2-ICR chemical probe

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.98 Å

Oligo State

monomer

Ligands

1 x 43D: 4-{4-(1-methyl-1H-pyrazol-4-yl)-1-[2-(4-methyl-1H-1,2,3-triazol-1-yl)ethyl]-1H-imidazol-5-yl}benzonitrile(Non-covalent)

43D.1: 12 residues within 4Å: Chain A: W.32, P.33, F.34, L.35, L.36, P.37, V.38, N.39, L.42, V.43, N.89, I.95 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:I.95 Hydrogen bonds: A:L.35, A:L.36, A:N.39, A:N.89

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 3 residues within 4Å: Chain A: H.28, E.29, Y.105 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.29, A:Y.105, A:Y.105 EDO.3: 4 residues within 4Å: Chain A: R.9, L.17, T.113, F.114 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.9, A:F.114 EDO.4: 5 residues within 4Å: Chain A: L.40, K.41, V.43, P.44, G.45 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.45 Water bridges: A:L.40, A:L.40, A:Y.46, A:K.47

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Drouin, L. et al., Structure Enabled Design of BAZ2-ICR, A Chemical Probe Targeting the Bromodomains of BAZ2A and BAZ2B. J.Med.Chem. (2015)

Release Date

2015-03-11

Peptides

Bromodomain adjacent to zinc finger domain protein 2B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bromodomain adjacent to zinc finger domain protein 2B

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