SMTL ID : 4y9g.1

Crystal structure of V30M mutated transthyretin in complex with 3-isomangostin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.89 Å

Oligo State

homo-tetramer

Ligands

4 x MKU: 5,9-dihydroxy-8-methoxy-2,2-dimethyl-7-(3-methylbut-2-en-1-yl)-3,4-dihydro-2H,6H-pyrano[3,2-b]xanthen-6-one(Non-covalent)

MKU.1: 16 residues within 4Å: Chain A: M.45, K.47, L.49, T.138, A.140, A.141, L.142, S.149, T.151, V.153 Chain C: K.47, L.49, A.140, T.151, V.153 Ligands: MKU.3 10 PLIP interactions: 5 interactions with chain C, 5 interactions with chain A Hydrophobic interactions: C:K.47, C:L.49, C:A.140, A:L.49, A:T.138, A:A.140, A:L.142, A:V.153 Hydrogen bonds: C:K.47 Water bridges: C:T.151 MKU.2: 16 residues within 4Å: Chain B: K.47, L.49, A.140, L.142, T.151, V.153 Chain D: K.47, L.49, T.138, A.140, A.141, L.142, S.149, T.151, V.153 Ligands: MKU.4 7 PLIP interactions: 4 interactions with chain B, 3 interactions with chain D Hydrophobic interactions: B:K.47, B:L.142, D:T.138, D:A.140, D:L.142 Hydrogen bonds: B:K.47, B:T.151 MKU.3: 16 residues within 4Å: Chain A: K.47, L.49, A.140, T.151, V.153 Chain C: M.45, K.47, L.49, T.138, A.140, A.141, L.142, S.149, T.151, V.153 Ligands: MKU.1 10 PLIP interactions: 5 interactions with chain A, 5 interactions with chain C Hydrophobic interactions: A:K.47, A:L.49, A:A.140, C:L.49, C:T.138, C:A.140, C:L.142, C:V.153 Hydrogen bonds: A:K.47 Water bridges: A:T.151 MKU.4: 16 residues within 4Å: Chain B: K.47, L.49, T.138, A.140, A.141, L.142, S.149, T.151, V.153 Chain D: K.47, L.49, A.140, L.142, T.151, V.153 Ligands: MKU.2 7 PLIP interactions: 3 interactions with chain B, 4 interactions with chain D Hydrophobic interactions: B:T.138, B:A.140, B:L.142, D:K.47, D:L.142 Hydrogen bonds: D:K.47, D:T.151

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yokoyama, T. et al., Discovery of gamma-Mangostin as an Amyloidogenesis Inhibitor. Sci Rep (2015)

Release Date

2015-09-09

Peptides

Transthyretin: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Transthyretin

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