SMTL ID : 4yab.2 (1 other biounit)

Crystal structure of TRIM24 PHD-bromodomain complexed with 1-methyl-5-(2-methyl-1 3-thiazol-4-yl)-2 3-dihydro-1H-indol-2-one (1)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.7, C.10, H.27, C.30 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.7, A:C.10, A:H.27, A:C.30 ZN.2: 4 residues within 4Å: Chain A: C.19, C.22, C.45, C.48 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.19, A:C.22, A:C.45, A:C.48

1 x 4CN: 1-methyl-5-(2-methyl-1,3-thiazol-4-yl)-1,3-dihydro-2H-indol-2-one(Non-covalent)

4CN.3: 9 residues within 4Å: Chain A: A.101, F.102, V.106, P.107, V.110, Y.113, F.157, N.158, V.164 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:V.106, A:P.107, A:V.110, A:F.157 Hydrogen bonds: A:N.158

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 5 residues within 4Å: Chain A: T.125, K.128, R.129, E.132, M.136 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.132 Water bridges: A:K.128 Salt bridges: A:K.128, A:R.129

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Palmer, W.S. et al., Structure-Guided Design of IACS-9571, a Selective High-Affinity Dual TRIM24-BRPF1 Bromodomain Inhibitor. J.Med.Chem. (2016)

Release Date

2015-06-24

Peptides

Transcription intermediary factor 1-alpha: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Transcription intermediary factor 1-alpha

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