SMTL ID : 4ybt.1

Crystal structure of TRIM24 PHD-bromodomain complexed with N-{1,3-dimethyl-2-oxo-6-[3-(oxolan-3-ylmethoxy)phenoxy]-2,3-dihydro-1H-1,3-benzodiazol-5-yl}-1-methyl-1H-imidazole-4-sulfonamide (7l)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.82 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.7, C.10, H.27, C.30 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.7, A:C.10, A:H.27, A:C.30 ZN.2: 4 residues within 4Å: Chain A: C.19, C.22, C.45, C.48 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.19, A:C.22, A:C.45, A:C.48

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.3: 2 residues within 4Å: Chain A: P.80, R.84 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.84, A:R.84

1 x 4BV: N-(1,3-dimethyl-2-oxo-6-{3-[(3S)-tetrahydrofuran-3-ylmethoxy]phenoxy}-2,3-dihydro-1H-benzimidazol-5-yl)-1-methyl-1H-imidazole-4-sulfonamide(Non-covalent)

4BV.4: 12 residues within 4Å: Chain A: L.100, A.101, F.102, V.106, P.107, V.110, Y.113, F.157, N.158, E.163, V.164, A.167 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.100, A:L.100, A:V.110 Hydrogen bonds: A:N.158

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Palmer, W.S. et al., Structure-Guided Design of IACS-9571, a Selective High-Affinity Dual TRIM24-BRPF1 Bromodomain Inhibitor. J.Med.Chem. (2016)

Release Date

2015-06-24

Peptides

Transcription intermediary factor 1-alpha: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Transcription intermediary factor 1-alpha

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