SMTL ID : 4ybm.1 (1 other biounit)

Crystal structure of TRIM24 PHD-bromodomain complexed with N-{6-[3-(benzyloxy)phenoxy]-1,3-dimethyl-2-oxo-2,3-dihydro-1H-1,3-benzodiazol-5-yl}-3,4-dimethoxybenzene-1-sulfonamide (7b)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.46 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.7, C.10, H.27, C.30 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.7, A:C.10, A:H.27, A:C.30 ZN.2: 4 residues within 4Å: Chain A: C.19, C.22, C.45, C.48 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.19, A:C.22, A:C.45, A:C.48

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 5 residues within 4Å: Chain A: A.155, E.156, F.157, N.158, E.159 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.158, A:E.159 GOL.4: 5 residues within 4Å: Chain A: Y.114, K.115, I.116, I.117, K.118 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.115 Water bridges: A:K.118

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Palmer, W.S. et al., Structure-Guided Design of IACS-9571, a Selective High-Affinity Dual TRIM24-BRPF1 Bromodomain Inhibitor. J.Med.Chem. (2016)

Release Date

2015-06-24

Peptides

Transcription intermediary factor 1-alpha: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Transcription intermediary factor 1-alpha

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