- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.86 Å
- Oligo State
- hetero-1-1-mer
- Ligands
- 4 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
- 1 x MO: MOLYBDENUM ATOM(Non-covalent)
- 1 x MGD: 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE(Non-covalent)
MGD.3: 44 residues within 4Å:- Chain A: N.35, C.36, T.37, K.76, D.170, W.200, G.201, S.202, N.203, Q.206, T.207, R.208, I.209, I.228, S.229, P.230, D.231, N.233, P.245, P.247, G.248, D.250, G.421, G.422, G.423, T.424, H.426, W.427, Y.457, I.458, G.459, N.761, P.763, H.764, S.765, R.766, S.768, V.769, H.770, R.830, H.835, R.882
- Ligands: MO.2, MD1.4
32 PLIP interactions:32 interactions with chain A- Hydrogen bonds: A:K.76, A:G.201, A:N.203, A:T.207, A:T.207, A:R.208, A:I.228, A:S.229, A:N.233, A:G.248, A:G.422, A:G.423, A:W.427, A:N.761, A:H.764, A:H.764, A:R.766, A:S.768, A:H.770, A:R.830, A:R.830
- Water bridges: A:S.202, A:S.202, A:S.202, A:D.231, A:D.231, A:D.250, A:D.250, A:S.768, A:S.768
- Salt bridges: A:D.250, A:R.882
- 1 x MD1: PHOSPHORIC ACID 4-(2-AMINO-4-OXO-3,4,5,6,-TETRAHYDRO-PTERIDIN-6-YL)-2-HYDROXY-3,4-DIMERCAPTO-BUT-3-EN-YL ESTER GUANYLATE ESTER(Non-covalent)
MD1.4: 38 residues within 4Å:- Chain A: L.33, V.34, N.35, P.138, Y.168, D.170, H.426, Y.536, R.537, G.538, N.539, Q.543, K.545, I.564, N.565, I.566, R.567, D.569, S.581, W.584, K.587, D.615, F.760, S.762, H.764, V.769, H.770, S.771, T.772, H.835, C.836, S.848, Q.849, C.852, Q.881, R.882
- Ligands: MO.2, MGD.3
36 PLIP interactions:36 interactions with chain A- Hydrogen bonds: A:Y.168, A:R.537, A:N.539, A:Q.543, A:K.545, A:N.565, A:R.567, A:R.567, A:D.569, A:D.569, A:S.581, A:S.581, A:S.581, A:W.584, A:K.587, A:S.762, A:H.764, A:V.769, A:H.770, A:S.771, A:S.771, A:T.772, A:T.772, A:H.835, A:Q.849, A:Q.881, A:Q.881, A:R.882
- Water bridges: A:Y.136, A:Y.136, A:R.537, A:R.537, A:G.538, A:G.538
- Salt bridges: A:D.615, A:H.770
- 8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.5: 8 residues within 4Å:- Chain A: W.242, I.243, H.244, V.398, T.399, A.402
- Chain B: E.268, G.272
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:H.244, A:T.399, A:T.399
EDO.6: 10 residues within 4Å:- Chain A: E.187, K.462, A.464, T.593, S.594, H.596, S.597, F.694, N.697, Y.708
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:K.462, A:N.697
- Water bridges: A:K.462, A:T.593
EDO.7: 8 residues within 4Å:- Chain A: F.192, N.193, S.194, K.195, A.218, N.221, G.222, A.223
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:A.218, A:N.221
EDO.8: 10 residues within 4Å:- Chain A: Y.510, D.513, S.514, Q.519, H.734, T.736, P.858, L.861, V.862, G.863
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:Y.510, A:S.514, A:T.736
EDO.9: 2 residues within 4Å:- Chain A: S.23, W.24
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:W.24, A:W.24
EDO.10: 9 residues within 4Å:- Chain A: D.803, N.804, P.896, I.897, S.898
- Chain B: T.109, P.110, R.111, W.116
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:D.803, A:N.804
EDO.15: 10 residues within 4Å:- Chain B: I.82, G.85, I.86, F.88, P.108, T.109, P.110, R.111, S.112, W.116
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:I.86, B:R.111, B:S.112
EDO.16: 9 residues within 4Å:- Chain A: F.9, E.10, Y.11, S.12, E.15
- Chain B: Y.155, R.157, E.158, Q.159
4 PLIP interactions:3 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:E.158, B:Q.159, A:Y.11
- Water bridges: B:R.157
- 1 x F3S: FE3-S4 CLUSTER(Non-covalent)
- 1 x NA: SODIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Youngblut, M.D. et al., Perchlorate Reductase Is Distinguished by Active Site Aromatic Gate Residues. J.Biol.Chem. (2016)
- Release Date
- 2016-03-09
- Peptides
- DMSO reductase family type II enzyme, molybdopterin subunit: A
DMSO reductase family type II enzyme, iron-sulfur subunit: B - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.86 Å
- Oligo State
- hetero-1-1-mer
- Ligands
- 4 x SF4: IRON/SULFUR CLUSTER(Non-covalent)
- 1 x MO: MOLYBDENUM ATOM(Non-covalent)
- 1 x MGD: 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINE DINUCLEOTIDE(Non-covalent)
- 1 x MD1: PHOSPHORIC ACID 4-(2-AMINO-4-OXO-3,4,5,6,-TETRAHYDRO-PTERIDIN-6-YL)-2-HYDROXY-3,4-DIMERCAPTO-BUT-3-EN-YL ESTER GUANYLATE ESTER(Non-covalent)
- 8 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 1 x F3S: FE3-S4 CLUSTER(Non-covalent)
- 1 x NA: SODIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Youngblut, M.D. et al., Perchlorate Reductase Is Distinguished by Active Site Aromatic Gate Residues. J.Biol.Chem. (2016)
- Release Date
- 2016-03-09
- Peptides
- DMSO reductase family type II enzyme, molybdopterin subunit: A
DMSO reductase family type II enzyme, iron-sulfur subunit: B - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B