SMTL ID : 4yy0.1

The structure of hemagglutinin from a H6N1 influenza virus (A/chicken/Taiwan/A2837/2013)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.59 Å

Oligo State

hetero-3-3-mer

Ligands

7 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: Q.15, K.22, N.23 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:K.22 Hydrogen bonds: A:N.23 NAG.2: 3 residues within 4Å: Chain A: N.167, T.169, T.240 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:T.240 Hydrogen bonds: A:N.167 NAG.3: 3 residues within 4Å: Chain C: Q.15, K.22, N.23 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:Q.15 NAG.4: 3 residues within 4Å: Chain C: N.167, T.169, T.240 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:T.240 Hydrogen bonds: C:N.167 NAG.5: 2 residues within 4Å: Chain D: N.154, T.156 1 PLIP interactions: 1 interactions with chain D Hydrophobic interactions: D:T.156 NAG.6: 2 residues within 4Å: Chain E: Q.15, N.23 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:Q.15 NAG.7: 3 residues within 4Å: Chain E: N.167, T.169, T.240 4 PLIP interactions: 4 interactions with chain E Hydrophobic interactions: E:T.240 Hydrogen bonds: E:N.167 Water bridges: E:G.238, E:T.240

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wang, F. et al., Structure of hemagglutinin from a H6N1 influenza virus (A/chicken/Taiwan/A2837/2013). To Be Published

Release Date

2016-03-23

Peptides

HA1: ACE
HA2: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

E
E

B
B

D
D

F
F

HA1

HA2

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