SMTL ID : 4z92.2 (3 other biounits)

crystal structure of parechovirus-1 virion

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

hetero-5-5-5-mer

Ligands

5 x A- U- U- U- U- U: RNA (5'-R(*AP*UP*UP*UP*UP*U)-3')(Non-covalent)

A-U-U-U-U-U.1: 12 residues within 4Å: Chain A: R.202, C.203 Chain B: L.41, T.44, R.55, A.56, Y.58, R.68 Chain H: Y.19 Chain K: M.15, T.17, W.21 Protein-ligand interaction information (PLIP) not available A-U-U-U-U-U.2: 12 residues within 4Å: Chain D: R.202, C.203 Chain E: L.41, T.44, R.55, A.56, Y.58, R.68 Chain K: Y.19 Chain N: M.15, T.17, W.21 Protein-ligand interaction information (PLIP) not available A-U-U-U-U-U.3: 12 residues within 4Å: Chain B: M.15, T.17, W.21 Chain G: R.202, C.203 Chain H: L.41, T.44, R.55, A.56, Y.58, R.68 Chain N: Y.19 Protein-ligand interaction information (PLIP) not available A-U-U-U-U-U.4: 12 residues within 4Å: Chain B: Y.19 Chain E: M.15, T.17, W.21 Chain J: R.202, C.203 Chain K: L.41, T.44, R.55, A.56, Y.58, R.68 Protein-ligand interaction information (PLIP) not available A-U-U-U-U-U.5: 12 residues within 4Å: Chain E: Y.19 Chain H: M.15, T.17, W.21 Chain M: R.202, C.203 Chain N: L.41, T.44, R.55, A.56, Y.58, R.68 Protein-ligand interaction information (PLIP) not available

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kalynych, S. et al., The Structure of Human Parechovirus 1 Reveals an Association of the RNA Genome with the Capsid. J.Virol. (2015)

Release Date

2015-11-18

Peptides

capsid subunit VP1: ADGJM
Capsid subunit VP3: BEHKN
capsid subunit VP0: CFILO

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
A

G
A

J
A

M
A

B
B

E
B

H
B

K
B

N
B

C
C

F
C

I
C

L
C

O
C

capsid subunit VP1

Capsid subunit VP3

capsid subunit VP0

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