SMTL ID : 5mjv.3 (3 other biounits)

Rebuild and re-refined model for Human Parechovirus 1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.09 Å

Oligo State

hetero-6-6-6-mer

Ligands

6 x G- U- U- U- U- U: RNA (5'-R(*GP*UP*UP*UP*UP*U)-3')(Non-covalent)

G-U-U-U-U-U.1: 8 residues within 4Å: Chain A: R.202, C.203, N.205 Chain B: R.55, A.56, F.57, Y.58, R.68 Protein-ligand interaction information (PLIP) not available G-U-U-U-U-U.2: 8 residues within 4Å: Chain D: R.202, C.203, N.205 Chain E: R.55, A.56, F.57, Y.58, R.68 Protein-ligand interaction information (PLIP) not available G-U-U-U-U-U.3: 8 residues within 4Å: Chain G: R.202, C.203, N.205 Chain H: R.55, A.56, F.57, Y.58, R.68 Protein-ligand interaction information (PLIP) not available G-U-U-U-U-U.4: 8 residues within 4Å: Chain J: R.202, C.203, N.205 Chain K: R.55, A.56, F.57, Y.58, R.68 Protein-ligand interaction information (PLIP) not available G-U-U-U-U-U.5: 8 residues within 4Å: Chain M: R.202, C.203, N.205 Chain N: R.55, A.56, F.57, Y.58, R.68 Protein-ligand interaction information (PLIP) not available G-U-U-U-U-U.6: 8 residues within 4Å: Chain P: R.202, C.203, N.205 Chain Q: R.55, A.56, F.57, Y.58, R.68 Protein-ligand interaction information (PLIP) not available

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shakeel, S. et al., Genomic RNA folding mediates assembly of human parechovirus. Nat Commun (2017)

Release Date

2017-01-11

Peptides

CAPSID SUBUNIT VP1: ADGJMP
CAPSID SUBUNIT VP3: BEHKNQ
CAPSID SUBUNIT VP0: CFILOR

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
A

G
A

J
A

M
A

P
A

B
B

E
B

H
B

K
B

N
B

Q
B

C
C

F
C

I
C

L
C

O
C

R
C

CAPSID SUBUNIT VP1

CAPSID SUBUNIT VP3

CAPSID SUBUNIT VP0

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