SMTL ID : 5mjv.2 (3 other biounits)

Rebuild and re-refined model for Human Parechovirus 1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.09 Å

Oligo State

hetero-5-5-5-mer

Ligands

5 x G- U- U- U- U- U: RNA (5'-R(*GP*UP*UP*UP*UP*U)-3')(Non-covalent)

G-U-U-U-U-U.1: 13 residues within 4Å: Chain A: R.202, C.203, N.205 Chain B: R.55, A.56, F.57, Y.58, R.68 Chain H: K.18, Y.19 Chain K: M.15, T.17, W.21 Protein-ligand interaction information (PLIP) not available G-U-U-U-U-U.2: 13 residues within 4Å: Chain D: R.202, C.203, N.205 Chain E: R.55, A.56, F.57, Y.58, R.68 Chain K: K.18, Y.19 Chain N: M.15, T.17, W.21 Protein-ligand interaction information (PLIP) not available G-U-U-U-U-U.3: 13 residues within 4Å: Chain B: M.15, T.17, W.21 Chain G: R.202, C.203, N.205 Chain H: R.55, A.56, F.57, Y.58, R.68 Chain N: K.18, Y.19 Protein-ligand interaction information (PLIP) not available G-U-U-U-U-U.4: 13 residues within 4Å: Chain B: K.18, Y.19 Chain E: M.15, T.17, W.21 Chain J: R.202, C.203, N.205 Chain K: R.55, A.56, F.57, Y.58, R.68 Protein-ligand interaction information (PLIP) not available G-U-U-U-U-U.5: 13 residues within 4Å: Chain E: K.18, Y.19 Chain H: M.15, T.17, W.21 Chain M: R.202, C.203, N.205 Chain N: R.55, A.56, F.57, Y.58, R.68 Protein-ligand interaction information (PLIP) not available

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shakeel, S. et al., Genomic RNA folding mediates assembly of human parechovirus. Nat Commun (2017)

Release Date

2017-01-11

Peptides

CAPSID SUBUNIT VP1: ADGJM
CAPSID SUBUNIT VP3: BEHKN
CAPSID SUBUNIT VP0: CFILO

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
A

G
A

J
A

M
A

B
B

E
B

H
B

K
B

N
B

C
C

F
C

I
C

L
C

O
C

CAPSID SUBUNIT VP1

CAPSID SUBUNIT VP3

CAPSID SUBUNIT VP0

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