SMTL ID : 4zae.1

Development of a novel class of potent and selective FIXa inhibitors

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.86 Å

Oligo State

hetero-1-1-mer

Ligands

1 x 4M1: 2,6-dichloro-N-[(2R)-2-(5,6-dimethyl-1H-benzimidazol-2-yl)-2-phenylethyl]-4-(4H-1,2,4-triazol-4-yl)benzamide(Non-covalent)

4M1.1: 19 residues within 4Å: Chain A: Y.86, R.132, H.135, K.136, F.162, D.179, S.180, C.181, Q.182, D.184, S.185, I.203, S.204, W.205, G.206, E.207, C.209, G.216, I.217 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:Y.86, A:F.162, A:Q.182, A:I.203, A:W.205 Hydrogen bonds: A:G.206 Water bridges: A:Q.182 pi-Stacking: A:F.162

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 8 residues within 4Å: Chain A: E.55, H.56, N.57, I.58, E.60, T.61, E.62, E.65 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.57, A:E.65 Water bridges: A:E.55

1 x NHE: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID(Non-covalent)

NHE.3: 7 residues within 4Å: Chain A: D.6, V.133, F.134, A.140, L.141, V.142, Q.144 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.134 Hydrogen bonds: A:L.141, A:V.142 Water bridges: A:D.6

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, T. et al., Development of a novel class of potent and selective FIXa inhibitors. Bioorg.Med.Chem.Lett. (2015)

Release Date

2015-06-03

Peptides

Coagulation factor IX: A
Coagulation factor IX: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Coagulation factor IX

Coagulation factor IX

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