SMTL ID : 4zd4.1 (1 other biounit)

Catalytic domain of Sst2 F403W mutant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.63 Å

Oligo State

monomer

Ligands

5 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 10 residues within 4Å: Chain A: E.48, C.50, D.77, T.78, C.79, W.101, H.103, V.115, D.116, T.119 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:E.48, A:C.79, A:T.119, A:T.119 Water bridges: A:S.113, A:S.113 EDO.2: 5 residues within 4Å: Chain A: C.79, G.80, T.81, Y.123 Ligands: EDO.3 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:T.81, A:Y.123 Water bridges: A:T.81, A:T.81, A:Y.123 EDO.3: 5 residues within 4Å: Chain A: E.84, T.119, S.122, Y.123 Ligands: EDO.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.122 EDO.4: 7 residues within 4Å: Chain A: E.48, D.77, H.105, Q.108, F.111, S.113 Ligands: ZN.7 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.113, A:S.113 Water bridges: A:E.48, A:D.77, A:T.107, A:D.116 EDO.5: 3 residues within 4Å: Chain A: L.97, T.98, M.126 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.98, A:T.98, A:M.126

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.6: 3 residues within 4Å: Chain A: K.171, T.174, M.175 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.171, A:K.171, A:T.174, A:M.175

2 x ZN: ZINC ION(Non-covalent)

ZN.7: 6 residues within 4Å: Chain A: E.48, H.103, H.105, S.113, D.116 Ligands: EDO.4 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.103, A:H.105, A:D.116, A:D.116, H2O.1 ZN.8: 4 residues within 4Å: Chain A: H.118, C.159, H.166, H.168 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.118, A:C.159, A:H.166, A:H.168

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bueno, A.N., Structure of the catalytic domain of Sst2 F403W mutant at 1.63 Angstroms resolution. To Be Published

Release Date

2015-10-14

Peptides

AMSH-like protease sst2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

AMSH-like protease sst2

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