SMTL ID : 4zft.1 (1 other biounit)

Catalytic domain of Sst2 F403W mutant bound to ubiquitin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-1-1-mer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.103, H.105, D.116 Chain B: G.81 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain B Metal complexes: A:H.103, A:H.105, A:D.116, A:D.116, B:G.81 ZN.2: 4 residues within 4Å: Chain A: H.118, C.159, H.166, H.168 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.118, A:C.159, A:H.166, A:H.168

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 7 residues within 4Å: Chain A: A.14, Y.15, L.22, R.146, V.176, A.177, H.181 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.15, A:R.146, A:A.177, A:H.181 EDO.4: 6 residues within 4Å: Chain A: T.98 Chain B: T.12, L.13, L.74, V.75, L.76 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:T.98, B:L.13, B:L.76 Water bridges: A:Y.123 EDO.5: 8 residues within 4Å: Chain A: N.95, L.96, L.97 Chain B: K.11, T.12, L.13, T.14, G.15 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:G.15, A:L.96

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bueno, A.N., Structure of the catalytic domain of Sst2 mutant F403W bound to ubiquitin at 2.3 Angstroms. To Be Published

Release Date

2015-10-14

Peptides

AMSH-like protease sst2: A
Polyubiquitin-B: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

AMSH-like protease sst2

Polyubiquitin-B

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