SMTL ID : 4zd4.2 (1 other biounit)

Catalytic domain of Sst2 F403W mutant

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.63 Å

Oligo State

monomer

Ligands

6 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: C.50, G.80, T.81, Y.123 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.81, A:Y.123 Water bridges: A:T.81, A:T.81 EDO.2: 4 residues within 4Å: Chain A: L.97, T.98, M.126, L.127 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.98, A:T.98, A:M.126 Water bridges: A:Q.91 EDO.3: 6 residues within 4Å: Chain A: E.48, D.77, H.105, Q.108, F.111, S.113 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.77 Water bridges: A:S.113 EDO.4: 5 residues within 4Å: Chain A: K.171, Y.173, T.174, M.175 Ligands: EDO.5 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.171, A:Y.173 EDO.5: 4 residues within 4Å: Chain A: K.171, V.172, Y.173 Ligands: EDO.4 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.171, A:V.172, A:Y.173 EDO.6: 6 residues within 4Å: Chain A: K.20, Q.124, L.125, P.128, D.149, L.153 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.20, A:L.125

1 x DTT: 2,3-DIHYDROXY-1,4-DITHIOBUTANE(Non-covalent)

DTT.7: 4 residues within 4Å: Chain A: K.56, H.66, H.94, Q.190 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.56, A:K.56

2 x ZN: ZINC ION(Non-covalent)

ZN.8: 5 residues within 4Å: Chain A: E.48, H.103, H.105, S.113, D.116 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.103, A:H.105, A:D.116, A:D.116, H2O.1 ZN.9: 4 residues within 4Å: Chain A: H.118, C.159, H.166, H.168 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.118, A:C.159, A:H.166, A:H.168

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bueno, A.N., Structure of the catalytic domain of Sst2 F403W mutant at 1.63 Angstroms resolution. To Be Published

Release Date

2015-10-14

Peptides

AMSH-like protease sst2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

AMSH-like protease sst2

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