SMTL ID : 5a3u.1

HIF prolyl hydroxylase 2 (PHD2/EGLN1) in complex with 6-(5-oxo-4-(1H- 1,2,3-triazol-1-yl)-2,5-dihydro-1H-pyrazol-1-yl)nicotinic acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.30 Å

Oligo State

homo-hexamer

Ligands

6 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 4 residues within 4Å: Chain A: H.139, D.141, H.200 Ligands: R8J.2 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.139, A:D.141, A:H.200 MN.3: 4 residues within 4Å: Chain B: H.139, D.141, H.200 Ligands: R8J.4 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.139, B:D.141, B:H.200 MN.5: 4 residues within 4Å: Chain C: H.139, D.141, H.200 Ligands: R8J.6 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:H.139, C:D.141, C:H.200 MN.7: 4 residues within 4Å: Chain D: H.139, D.141, H.200 Ligands: R8J.8 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:H.139, D:D.141, D:H.200 MN.9: 4 residues within 4Å: Chain E: H.139, D.141, H.200 Ligands: R8J.10 3 PLIP interactions: 3 interactions with chain E Metal complexes: E:H.139, E:D.141, E:H.200 MN.11: 4 residues within 4Å: Chain F: H.139, D.141, H.200 Ligands: R8J.12 3 PLIP interactions: 3 interactions with chain F Metal complexes: F:H.139, F:D.141, F:H.200

6 x R8J: 6-(5-oxo-4-(1H-1,2,3-triazol-1-yl)-2,5-dihydro-1H-pyrazol-1-yl)nicotinic acid(Non-covalent)

R8J.2: 10 residues within 4Å: Chain A: M.125, Y.129, H.139, D.141, R.148, H.200, V.202, R.209, W.215 Ligands: MN.1 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:W.215 Hydrogen bonds: A:Y.129, A:R.209 Salt bridges: A:R.148 R8J.4: 11 residues within 4Å: Chain B: M.125, Y.129, H.139, D.141, R.148, H.200, V.202, R.209, W.215 Chain E: N.144 Ligands: MN.3 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.209 Salt bridges: B:R.148 pi-Stacking: B:Y.129, B:W.215 R8J.6: 9 residues within 4Å: Chain A: L.230 Chain C: Y.129, H.139, D.141, R.148, I.153, R.209, W.215 Ligands: MN.5 3 PLIP interactions: 3 interactions with chain C Hydrophobic interactions: C:W.215 Hydrogen bonds: C:R.209 Salt bridges: C:R.148 R8J.8: 10 residues within 4Å: Chain D: M.125, Y.129, H.139, D.141, R.148, H.200, V.202, R.209, W.215 Ligands: MN.7 3 PLIP interactions: 3 interactions with chain D Hydrophobic interactions: D:W.215 Hydrogen bonds: D:R.209 Salt bridges: D:R.148 R8J.10: 11 residues within 4Å: Chain B: N.144 Chain E: M.125, Y.129, H.139, D.141, R.148, H.200, V.202, R.209, W.215 Ligands: MN.9 5 PLIP interactions: 5 interactions with chain E Hydrogen bonds: E:Y.129, E:R.209 Salt bridges: E:R.148 pi-Stacking: E:Y.129, E:W.215 R8J.12: 9 residues within 4Å: Chain D: L.230 Chain F: Y.129, H.139, D.141, R.148, I.153, R.209, W.215 Ligands: MN.11 4 PLIP interactions: 4 interactions with chain F Hydrophobic interactions: F:W.215 Hydrogen bonds: F:Y.129, F:R.209 Salt bridges: F:R.148

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chan, M.C. et al., Potent and Selective Triazole-Based Inhibitors of the Hypoxia-Inducible Factor Prolyl-Hydroxylases with Activity in the Murine Brain. Plos One (2015)

Release Date

2015-06-17

Peptides

EGL NINE HOMOLOG 1: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
A

E
B

F
C

EGL NINE HOMOLOG 1

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