SMTL ID : 5a4u.1

AtGSTF2 from Arabidopsis thaliana in complex with indole-3-aldehyde

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-hexamer

Ligands

8 x I3A: 1H-INDOLE-3-CARBALDEHYDE(Non-covalent)

I3A.1: 9 residues within 4Å: Chain A: I.99, I.102, G.103, V.150, Y.151, R.154, L.161, A.162, T.169 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:V.150, A:Y.151 Hydrogen bonds: A:G.103, A:T.169 pi-Cation interactions: A:R.154 I3A.3: 9 residues within 4Å: Chain B: I.99, I.102, G.103, V.150, Y.151, R.154, L.161, A.162, T.169 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:V.150, B:Y.151 Hydrogen bonds: B:G.103 pi-Cation interactions: B:R.154 I3A.5: 10 residues within 4Å: Chain C: I.99, I.102, G.103, V.106, V.150, Y.151, R.154, L.161, A.162, T.169 5 PLIP interactions: 5 interactions with chain C Hydrophobic interactions: C:V.106, C:V.150, C:Y.151 Hydrogen bonds: C:G.103 pi-Cation interactions: C:R.154 I3A.6: 9 residues within 4Å: Chain C: I.94, Y.97, A.98, A.101 Chain D: A.70, Q.73, Y.74, H.77, Y.97 10 PLIP interactions: 5 interactions with chain D, 5 interactions with chain C Hydrophobic interactions: D:Q.73, D:Y.74, C:Y.97, C:Y.97, C:A.98, C:A.101 Hydrogen bonds: D:Q.73, D:Y.97 pi-Stacking: D:H.77, C:Y.97 I3A.8: 10 residues within 4Å: Chain D: I.99, I.102, G.103, V.106, V.150, Y.151, R.154, L.161, A.162, T.169 6 PLIP interactions: 6 interactions with chain D Hydrophobic interactions: D:V.106, D:V.150, D:Y.151 Hydrogen bonds: D:G.103, D:T.169 pi-Cation interactions: D:R.154 I3A.9: 10 residues within 4Å: Chain E: I.99, I.102, G.103, V.150, Y.151, R.154, L.161, A.162, T.169 Chain F: F.52 6 PLIP interactions: 5 interactions with chain E, 1 interactions with chain F Hydrophobic interactions: E:V.150, E:Y.151, E:Y.151, F:F.52 Hydrogen bonds: E:G.103 pi-Cation interactions: E:R.154 I3A.11: 10 residues within 4Å: Chain F: I.99, I.102, G.103, V.106, V.150, Y.151, R.154, L.161, A.162, T.169 5 PLIP interactions: 5 interactions with chain F Hydrophobic interactions: F:V.106, F:V.150, F:Y.151 Hydrogen bonds: F:G.103 pi-Cation interactions: F:R.154 I3A.12: 9 residues within 4Å: Chain E: A.70, Q.73, Y.74, H.77, Y.97 Chain F: I.94, Y.97, A.98, A.101 10 PLIP interactions: 5 interactions with chain F, 5 interactions with chain E Hydrophobic interactions: F:Y.97, F:Y.97, F:A.98, F:A.101, E:Q.73, E:Y.74 pi-Stacking: F:Y.97, E:H.77 Hydrogen bonds: E:Y.97, E:Y.97

5 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 6 residues within 4Å: Chain A: A.14, V.55, P.56, E.67, S.68, R.69 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:A.14 Hydrogen bonds: A:E.67, A:S.68, A:R.69 Water bridges: A:R.69 ACT.4: 8 residues within 4Å: Chain B: A.14, R.17, Q.54, V.55, P.56, E.67, S.68, R.69 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:R.17, B:V.55, B:S.68, B:R.69 Water bridges: B:E.67, B:R.69 ACT.7: 7 residues within 4Å: Chain C: A.14, Q.54, V.55, P.56, E.67, S.68, R.69 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:V.55, C:E.67, C:S.68, C:R.69 Water bridges: C:R.17, C:R.69 ACT.10: 6 residues within 4Å: Chain E: A.14, V.55, P.56, E.67, S.68, R.69 7 PLIP interactions: 7 interactions with chain E Hydrogen bonds: E:V.55, E:E.67, E:S.68, E:R.69 Water bridges: E:R.17, E:E.67, E:R.69 ACT.13: 7 residues within 4Å: Chain F: A.14, Q.54, V.55, P.56, E.67, S.68, R.69 7 PLIP interactions: 7 interactions with chain F Hydrogen bonds: F:R.17, F:V.55, F:E.67, F:S.68, F:R.69 Water bridges: F:E.67, F:R.69

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ahmad, L. et al., Structural evidence for Arabidopsis glutathione transferase AtGSTF2 functioning as a transporter of small organic ligands. FEBS Open Bio (2017)

Release Date

2016-06-29

Peptides

GLUTATHIONE S-TRANSFERASE F2: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

GLUTATHIONE S-TRANSFERASE F2

Related Entries With Identical Sequence