SMTL ID : 5a4v.1

AtGSTF2 from Arabidopsis thaliana in complex with quercetin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.38 Å

Oligo State

homo-hexamer

Ligands

6 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 7 residues within 4Å: Chain A: A.14, R.17, V.55, P.56, E.67, S.68, R.69 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:A.14 Hydrogen bonds: A:R.17, A:E.67, A:S.68, A:R.69 Water bridges: A:R.69 ACT.3: 7 residues within 4Å: Chain B: A.14, Q.54, V.55, P.56, E.67, S.68, R.69 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:V.55, B:S.68, B:R.69 Water bridges: B:E.67, B:R.69 ACT.4: 6 residues within 4Å: Chain C: A.14, R.17, P.56, E.67, S.68, R.69 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:R.17, C:V.55, C:S.68, C:R.69 Water bridges: C:E.67, C:R.69 ACT.6: 7 residues within 4Å: Chain D: A.14, R.17, Q.54, P.56, E.67, S.68, R.69 6 PLIP interactions: 6 interactions with chain D Hydrogen bonds: D:R.17, D:E.67, D:E.67, D:S.68, D:R.69 Water bridges: D:R.69 ACT.7: 6 residues within 4Å: Chain E: A.14, R.17, P.56, E.67, S.68, R.69 8 PLIP interactions: 8 interactions with chain E Hydrogen bonds: E:R.17, E:V.55, E:E.67, E:E.67, E:S.68, E:R.69 Water bridges: E:R.69, E:R.69 ACT.9: 6 residues within 4Å: Chain F: A.14, Q.54, P.56, E.67, S.68, R.69 7 PLIP interactions: 7 interactions with chain F Hydrogen bonds: F:E.67, F:E.67, F:S.68, F:R.69 Water bridges: F:R.17, F:P.56, F:R.69

3 x QUE: 3,5,7,3',4'-PENTAHYDROXYFLAVONE(Non-covalent)

QUE.2: 11 residues within 4Å: Chain A: H.77, I.94, Y.97, A.98, A.101 Chain B: A.70, Q.73, Y.74, H.77, I.94, Y.97 11 PLIP interactions: 6 interactions with chain A, 5 interactions with chain B Hydrophobic interactions: A:Y.97, B:Q.73 Hydrogen bonds: A:I.94, A:A.98, B:A.70 pi-Stacking: A:H.77, A:Y.97, A:Y.97, B:H.77, B:Y.97 Water bridges: B:H.77 QUE.5: 9 residues within 4Å: Chain C: Q.73, Y.74, H.77, Y.97 Chain D: H.77, I.94, Y.97, A.98, A.101 7 PLIP interactions: 5 interactions with chain D, 2 interactions with chain C Hydrophobic interactions: D:Y.97, D:Y.97, D:Y.97 pi-Stacking: D:H.77, D:Y.97, C:H.77, C:Y.97 QUE.8: 11 residues within 4Å: Chain E: A.70, Q.73, Y.74, H.77, Y.97 Chain F: Q.73, H.77, I.94, Y.97, A.98, A.101 8 PLIP interactions: 4 interactions with chain F, 4 interactions with chain E Hydrophobic interactions: F:Y.97, F:Y.97 pi-Stacking: F:H.77, F:Y.97, E:H.77, E:Y.97 Hydrogen bonds: E:A.70 Water bridges: E:H.77

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ahmad, L. et al., Structural evidence for Arabidopsis glutathione transferase AtGSTF2 functioning as a transporter of small organic ligands. FEBS Open Bio (2017)

Release Date

2016-06-29

Peptides

GLUTATHIONE S-TRANSFERASE F2: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

GLUTATHIONE S-TRANSFERASE F2

Related Entries With Identical Sequence