SMTL ID : 5a6n.1

Crystal structure of human death associated protein kinase 3 (DAPK3) in complex with compound 2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

1 x U7E: 5-(3-SULFAMOYLPHENYL)-1H-1,2,3,4-TETRAZOL-1-IDE(Non-covalent)

U7E.1: 9 residues within 4Å: Chain A: G.14, S.15, V.21, K.36, I.71, L.87, M.140, I.154, D.155 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:V.21 Hydrogen bonds: A:S.15, A:D.155 Water bridges: A:F.156, A:F.156

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 2 residues within 4Å: Chain A: E.94, D.97 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.94 GOL.5: 7 residues within 4Å: Chain B: K.36, E.58, L.62, I.71, I.154, D.155, F.156 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:K.36, B:K.36, B:E.58, B:E.58, B:D.155, B:F.156

2 x PGO: S-1,2-PROPANEDIOL(Non-covalent)

PGO.3: 4 residues within 4Å: Chain A: Y.228, D.229, F.230, R.247 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.228, A:F.230, A:R.247 PGO.4: 4 residues within 4Å: Chain A: F.96, I.203, L.204, G.207 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.204, A:G.207

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rodrigues, T. et al., De Novo Fragment Design for Drug Discovery and Chemical Biology. Angew.Chem.Int.Ed.Engl. (2015)

Release Date

2015-10-21

Peptides

DEATH-ASSOCIATED PROTEIN KINASE 3: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

DEATH-ASSOCIATED PROTEIN KINASE 3

Related Entries With Identical Sequence