SMTL ID : 5abw.1

Neutrophil elastase inhibitors for the treatment of (cardio)pulmonary diseases

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x NAG- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-FUC.1: 8 residues within 4Å: Chain A: W.12, Q.121, C.122, N.144, V.178, C.179, N.180, G.181 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:W.12, A:V.178 Hydrogen bonds: A:Q.121, A:N.180, A:G.181

1 x WQQ: 1-(3-CHLOROPHENYL)-5-(3,5-DIMETHYLISOXAZOL-4-YL)-6-METHYL-N-[4-(METHYLSULFONYL)BENZYL]-2-OXO-1,2-DIHYDROPYRIDINE-3-CARBOXAMIDE(Non-covalent)

WQQ.2: 13 residues within 4Å: Chain A: H.41, N.84, L.85, R.153, C.169, F.170, S.173, A.187, S.188, F.189, V.190, R.191 Ligands: CL.3 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:H.41, A:L.85, A:L.85, A:F.170, A:F.170, A:F.170, A:F.189, A:V.190, A:V.190, A:R.191 Hydrogen bonds: A:V.190, A:V.190

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 3 residues within 4Å: Chain A: R.191, G.192 Ligands: WQQ.2 Ligand excluded by PLIP CL.4: 2 residues within 4Å: Chain A: R.114, R.115 Ligand excluded by PLIP CL.5: 2 residues within 4Å: Chain A: V.46, N.47 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

von Nussbaum, F. et al., Neutrophil elastase inhibitors for the treatment of (cardio)pulmonary diseases: Into clinical testing with pre-adaptive pharmacophores. Bioorg. Med. Chem. Lett. (2015)

Release Date

2015-08-19

Peptides

NEUTROPHIL ELASTASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

NEUTROPHIL ELASTASE

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