- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-dimer
- Ligands
- 6 x ZN: ZINC ION(Non-covalent)
- 2 x WL3: 2-(4-fluorophenyl)carbonylbenzoic acid(Non-covalent)
WL3.4: 15 residues within 4Å:- Chain A: F.62, Y.67, W.87, H.116, D.117, D.118, H.179, C.198, R.205, G.209, N.210, H.240
- Ligands: ZN.1, ZN.2, OH.5
15 PLIP interactions:15 interactions with chain A- Hydrophobic interactions: A:F.62, A:F.62, A:Y.67, A:Y.67, A:W.87, A:W.87, A:H.116
- Hydrogen bonds: A:N.210, A:N.210
- Water bridges: A:H.179, A:R.205, A:R.205
- Salt bridges: A:H.179, A:R.205, A:H.240
WL3.11: 16 residues within 4Å:- Chain B: F.62, Y.67, W.87, H.116, D.117, D.118, H.179, C.198, Y.201, R.205, G.209, N.210, H.240
- Ligands: ZN.8, ZN.9, OH.12
13 PLIP interactions:13 interactions with chain B- Hydrophobic interactions: B:F.62, B:W.87, B:H.116
- Hydrogen bonds: B:N.210, B:N.210
- Water bridges: B:H.179, B:R.205, B:R.205
- Salt bridges: B:H.179, B:R.205, B:H.240
- pi-Stacking: B:Y.67
- pi-Cation interactions: B:H.240
- 2 x OH: HYDROXIDE ION(Non-covalent)
OH.5: 9 residues within 4Å:- Chain A: H.114, H.116, D.118, R.119, H.179, C.198
- Ligands: ZN.1, ZN.2, WL3.4
No protein-ligand interaction detected (PLIP)OH.12: 9 residues within 4Å:- Chain B: H.114, H.116, D.118, R.119, H.179, C.198
- Ligands: ZN.8, ZN.9, WL3.11
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:D.118
- 4 x CL: CHLORIDE ION(Non-functional Binders)
CL.6: 4 residues within 4Å:- Chain A: A.132, H.153
- Ligands: ZN.3, CL.7
Ligand excluded by PLIPCL.7: 5 residues within 4Å:- Chain A: A.132, T.152, H.153
- Ligands: ZN.3, CL.6
Ligand excluded by PLIPCL.13: 4 residues within 4Å:- Chain B: A.132, H.153
- Ligands: ZN.10, CL.14
Ligand excluded by PLIPCL.14: 5 residues within 4Å:- Chain B: A.132, Y.134, H.153
- Ligands: ZN.10, CL.13
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Christopeit, T. et al., Discovery of Novel Inhibitor Scaffolds Against the Metallo-Beta-Lactamase Vim-2 by Spr Based Fragment Screening. J.Med.Chem. (2015)
- Release Date
- 2015-11-04
- Peptides
- BETA-LACTAMASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-dimer
- Ligands
- 6 x ZN: ZINC ION(Non-covalent)
- 2 x WL3: 2-(4-fluorophenyl)carbonylbenzoic acid(Non-covalent)
- 2 x OH: HYDROXIDE ION(Non-covalent)
- 4 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Christopeit, T. et al., Discovery of Novel Inhibitor Scaffolds Against the Metallo-Beta-Lactamase Vim-2 by Spr Based Fragment Screening. J.Med.Chem. (2015)
- Release Date
- 2015-11-04
- Peptides
- BETA-LACTAMASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B