SMTL ID : 5auv.1

Crystal structure of DAPK1 in complex with apigenin.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

1 x AGI: 5,7-dihydroxy-2-(4-hydroxyphenyl)-4H-chromen-4-one(Non-covalent)

AGI.1: 14 residues within 4Å: Chain A: G.20, S.21, G.22, V.27, A.40, K.42, I.77, E.94, L.95, V.96, M.146, I.160, D.161 Ligands: CL.2 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:V.27, A:A.40, A:K.42, A:I.160 Hydrogen bonds: A:K.42, A:V.96, A:V.96 Water bridges: A:E.100, A:E.100

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 4 residues within 4Å: Chain A: K.42, L.93, D.161 Ligands: AGI.1 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yokoyama, T. et al., Structural Insight into the Interactions between Death-Associated Protein Kinase 1 and Natural Flavonoids. J.Med.Chem. (2015)

Release Date

2015-10-07

Peptides

Death-associated protein kinase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Death-associated protein kinase 1

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