SMTL ID : 5c0m.2 (1 other biounit)

Crystal structure of SGF29 tandem tudor domain in complex with a Carba containing peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

hetero-1-1-mer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: S.93, R.95, R.96 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.93 Water bridges: A:S.93 Salt bridges: A:R.95, A:R.96

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 8 residues within 4Å: Chain A: M.7, L.10, Q.11, L.124, Y.125, P.126, Q.127, T.128 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:M.7, A:Q.127, A:T.128, A:T.128 Water bridges: A:Y.125, A:Q.127

3 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.3: 2 residues within 4Å: Chain A: N.75, R.94 No protein-ligand interaction detected (PLIP) UNX.4: 2 residues within 4Å: Chain A: S.13, R.169 No protein-ligand interaction detected (PLIP) UNX.5: 2 residues within 4Å: Chain A: P.36, A.37 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kamps, J.J. et al., Chemical basis for the recognition of trimethyllysine by epigenetic reader proteins. Nat Commun (2015)

Release Date

2015-07-01

Peptides

SAGA-associated factor 29 homolog: A
Carba-containing peptide: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
C

SAGA-associated factor 29 homolog

Carba-containing peptide

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