SMTL ID : 5c0w.1

Structure of a 12-subunit nuclear exosome complex bound to single-stranded RNA substrates

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 4.60 Å

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 5 residues within 4Å: Chain J: D.546, N.554, D.555 Chain M: A.17, A.18 1 PLIP interactions: 1 interactions with chain J Metal complexes: J:D.546

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain J: C.50, C.55, C.58, H.187 4 PLIP interactions: 4 interactions with chain J Metal complexes: J:C.50, J:C.55, J:C.58, J:H.187

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Makino, D.L. et al., RNA degradation paths in a 12-subunit nuclear exosome complex. Nature (2015)

Release Date

2015-07-29

Peptides

Exosome complex component RRP45: A
Exosome complex component SKI6: B
Exosome complex component RRP43: C
Exosome complex component RRP46: D
Exosome complex component RRP42: E
Exosome complex component MTR3: F
Exosome complex component RRP40: G
Exosome complex component RRP4: H
Exosome complex component CSL4: I
Exosome complex exonuclease DIS3: J
Exosome complex exonuclease RRP6: K
Exosome complex protein LRP1: L

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

Exosome complex component RRP45

Exosome complex component SKI6

Exosome complex component RRP43

Exosome complex component RRP46

Exosome complex component RRP42

Exosome complex component MTR3

Exosome complex component RRP40

Exosome complex component RRP4

Exosome complex component CSL4

Exosome complex exonuclease DIS3

Exosome complex exonuclease RRP6

Exosome complex protein LRP1

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