SMTL ID : 6ft6.1

Structure of the Nop53 pre-60S particle bound to the exosome nuclear cofactors

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY
Oligo State
hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer
Ligands
4 x ZN: ZINC ION(Non-covalent)
2 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)
2 x MG: MAGNESIUM ION(Non-covalent)
Links
RCSB   PDBe   PDBj   PDBsum   CATH   PLIP
Citation
Schuller, J.M. et al., Structure of the nuclear exosome captured on a maturing preribosome. Science (2018)
Release Date
2018-03-28
Peptides
60S ribosomal protein L2-A: B
60S ribosomal protein L3: C
60S ribosomal protein L4-A: D
60S ribosomal protein L5: E
60S ribosomal protein L6-A: F
60S ribosomal protein L7-A: G
60S ribosomal protein L8-A: H
60S ribosomal protein L9-A: I
Bud site selection protein 20: J
60S ribosomal protein L11-A: K
60S ribosomal protein L13-A: L
60S ribosomal protein L14-A: M
60S ribosomal protein L15-A: N
60S ribosomal protein L16-A: O
60S ribosomal protein L17-A: P
60S ribosomal protein L18-A: Q
60S ribosomal protein L19-A: R
60S ribosomal protein L20-A: S
60S ribosomal protein L21-A: T
60S ribosomal protein L22-A: U
60S ribosomal protein L23-A: V
Ribosome assembly factor MRT4: W
60S ribosomal protein L25: X
60S ribosomal protein L26-A: Y
60S ribosomal protein L27-A: Z
60S ribosomal protein L28: 0
Nucleolar GTP-binding protein 1: 1
60S ribosomal protein L30: 2
60S ribosomal protein L31-A: 3
60S ribosomal protein L32: 4
60S ribosomal protein L33-A: 5
60S ribosomal protein L34-A: 6
60S ribosomal protein L35-A: 7
60S ribosomal protein L36-A: 8
60S ribosomal protein L37-A: 9
60S ribosomal protein L38: a
60S ribosomal protein L39: b
Nucleolar GTP-binding protein 2: c
Pescadillo homolog: d
60S ribosomal protein L43-A: e
Ribosome biogenesis protein NSA2: f
Nuclear GTP-binding protein NUG1: g
Ribosome biogenesis protein RLP24: h
Ribosome biogenesis protein RPF2: i
Regulator of ribosome biosynthesis: j
Ribosome assembly protein 4: k
Eukaryotic translation initiation factor 6: l
UPF0642 protein YBL028C: m
Probable metalloprotease ARX1: p
rRNA-processing protein CGR1: q
Exosome complex exonuclease RRP6: r
Exosome complex protein LRP1: s
ATP-dependent RNA helicase DOB1: t
MPP6: u
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
B
A
C
B
D
C
E
D
F
E
G
F
H
G
I
H
J
I
K
J
L
L
M
M
N
N
O
O
P
P
Q
Q
R
R
S
S
T
T
U
U
V
V
W
W
X
X
Y
Y
Z
Z
0
a
1
b
2
c
3
d
4
e
5
f
6
g
7
h
8
i
9
j
a
k
b
l
c
m
d
n
e
p
f
r
g
s
h
u
i
v
j
w
k
x
l
y
m
z
p
4
q
5
r
KK
s
LL
t
MM
u
NN

60S ribosomal protein L2-A

60S ribosomal protein L3

60S ribosomal protein L4-A

60S ribosomal protein L5

60S ribosomal protein L6-A

60S ribosomal protein L7-A

60S ribosomal protein L8-A

60S ribosomal protein L9-A

Bud site selection protein 20

60S ribosomal protein L11-A

60S ribosomal protein L13-A

60S ribosomal protein L14-A

60S ribosomal protein L15-A

60S ribosomal protein L16-A

60S ribosomal protein L17-A

60S ribosomal protein L18-A

60S ribosomal protein L19-A

60S ribosomal protein L20-A

60S ribosomal protein L21-A

60S ribosomal protein L22-A

60S ribosomal protein L23-A

Ribosome assembly factor MRT4

60S ribosomal protein L25

60S ribosomal protein L26-A

60S ribosomal protein L27-A

60S ribosomal protein L28

Nucleolar GTP-binding protein 1

60S ribosomal protein L30

60S ribosomal protein L31-A

60S ribosomal protein L32

60S ribosomal protein L33-A

60S ribosomal protein L34-A

60S ribosomal protein L35-A

60S ribosomal protein L36-A

60S ribosomal protein L37-A

60S ribosomal protein L38

60S ribosomal protein L39

Nucleolar GTP-binding protein 2

Pescadillo homolog

60S ribosomal protein L43-A

Ribosome biogenesis protein NSA2

Nuclear GTP-binding protein NUG1

Ribosome biogenesis protein RLP24

Ribosome biogenesis protein RPF2

Regulator of ribosome biosynthesis

Ribosome assembly protein 4

Eukaryotic translation initiation factor 6

UPF0642 protein YBL028C

Probable metalloprotease ARX1

rRNA-processing protein CGR1

Exosome complex exonuclease RRP6

Exosome complex protein LRP1

ATP-dependent RNA helicase DOB1

MPP6

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1t0k.1 | 2ww9.1 | 2wwa.1 | 2wwb.1 | 3gt8.1 | 3j16.1 | 3j2i.2 | 3j6x.2 | 3j6x.3 | 3j6x.4 | 3j6x.5 | 3j6x.6 | 3j6x.7 | 3j6x.8 | 3j6x.9 | 3j6x.11 | 3j6x.12 | 3j6x.13 | 3j6x.14 | 3j6x.15 | 3j6x.16 | 3j6x.17 | 3j6x.18 | 3j6x.19 | 3j6x.20 | 3j6x.21 | 3j6x.22 | 3j6x.24 | 3j6x.25 | 3j6x.26  more...