SMTL ID : 5c8z.1

ZHD-ZGR complex after ZHD crystal soaking in ZEN for 30min

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-dimer

Ligands

2 x ZGR: 2,4-dihydroxy-6-[(1E,10S)-10-hydroxy-6-oxoundec-1-en-1-yl]benzoic acid(Non-covalent)

ZGR.1: 17 residues within 4Å: Chain A: D.31, G.32, L.33, S.102, S.103, P.128, K.130, L.132, L.135, M.154, W.183, Y.187, P.188, I.191, P.192, H.242, F.243 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:D.31, A:L.33, A:P.128, A:P.128, A:L.135, A:W.183, A:P.188, A:P.192, A:F.243 Hydrogen bonds: A:G.32, A:S.102, A:S.103, A:L.132, A:W.183 Water bridges: A:L.132, A:P.188 ZGR.8: 17 residues within 4Å: Chain B: D.31, G.32, S.102, S.103, P.128, K.130, L.132, L.135, M.154, V.158, W.183, Y.187, P.188, I.191, P.192, H.242, F.243 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:D.31, B:P.128, B:P.128, B:W.183, B:P.188, B:P.192, B:F.243 Hydrogen bonds: B:G.32, B:S.102, B:S.103, B:L.132 Water bridges: B:L.132, B:P.188

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 8 residues within 4Å: Chain A: L.127, P.128, T.129, K.130, L.132, S.220, F.221, D.223 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.129, A:K.130, A:D.223 GOL.3: 5 residues within 4Å: Chain A: I.119, R.120, P.207, H.263, N.266 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.263, A:H.263, A:N.266 GOL.9: 8 residues within 4Å: Chain B: L.127, P.128, T.129, K.130, L.132, S.220, F.221, D.223 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:T.129, B:K.130, B:D.223 GOL.10: 4 residues within 4Å: Chain B: G.60, A.65, Y.72, V.182 1 PLIP interactions: 1 interactions with chain B Water bridges: B:Y.72

3 x FMT: FORMIC ACID(Non-functional Binders)

FMT.4: 7 residues within 4Å: Chain A: L.155, N.156, D.157, V.158, S.159, G.160, M.241 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.157, A:G.160 FMT.5: 2 residues within 4Å: Chain A: Y.16, R.63 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.63 Water bridges: A:R.175 FMT.6: 5 residues within 4Å: Chain A: D.25, D.92, I.93, K.94, H.95 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:D.25, A:R.52, A:K.94, A:K.94, A:K.94, A:H.95 Water bridges: A:D.25

2 x K: POTASSIUM ION(Non-covalent)

K.7: 4 residues within 4Å: Chain A: H.248, P.249, D.250, V.251 No protein-ligand interaction detected (PLIP) K.11: 4 residues within 4Å: Chain B: H.248, P.249, D.250, V.251 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Qi, Q. et al., The structure of a complex of the lactonohydrolase zearalenone hydrolase with the hydrolysis product of zearalenone at 1.60 angstrom resolution. Acta Crystallogr F Struct Biol Commun (2017)

Release Date

2016-06-29

Peptides

Zearalenone hydrolase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Zearalenone hydrolase

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