SMTL ID : 5ccn.1

Human Cyclophilin D Complexed with Inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x K: POTASSIUM ION(Non-functional Binders)

K.1: 1 residues within 4Å: Ligands: PGE.4 No protein-ligand interaction detected (PLIP)

1 x FMT: FORMIC ACID(Non-functional Binders)

FMT.2: 6 residues within 4Å: Chain A: C.39, T.40, G.41, K.48, D.159, C.160 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:C.39

1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.3: 4 residues within 4Å: Chain A: V.92, G.93, P.94, H.130 No protein-ligand interaction detected (PLIP)

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.4: 6 residues within 4Å: Chain A: I.56, P.57, S.58, F.59, W.120 Ligands: K.1 No protein-ligand interaction detected (PLIP)

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.5: 2 residues within 4Å: Chain A: Q.162, S.164 No protein-ligand interaction detected (PLIP)

1 x 4ZZ: ethyl N-{[3-(3-aminopyridin-4-yl)benzyl]carbamoyl}glycinate(Non-covalent)

4ZZ.6: 12 residues within 4Å: Chain A: R.54, F.59, M.60, Q.62, G.71, T.72, A.100, N.101, T.106, Q.110, F.112, H.125 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:F.59, A:A.100, A:Q.110, A:F.112 Hydrogen bonds: A:Q.62, A:N.101, A:N.101, A:N.101, A:T.106 Salt bridges: A:R.54, A:H.125

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gibson, R.P. et al., Human Cyclophilin D Complexed with Inhibitor. To Be Published

Release Date

2016-07-20

Peptides

Peptidyl-prolyl cis-trans isomerase F, mitochondrial: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peptidyl-prolyl cis-trans isomerase F, mitochondrial

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