SMTL ID : 5cgc.1

Structure of the human class C GPCR metabotropic glutamate receptor 5 transmembrane domain in complex with the negative allosteric modulator 3-chloro-4-fluoro-5-[6-(1H-pyrazol-1-yl)pyrimidin-4-yl]benzonitrile

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

monomer

Ligands

4 x OLA: OLEIC ACID(Non-covalent)

OLA.1: 10 residues within 4Å: Chain A: N.332, V.336, L.339, G.340, G.343, C.377, W.380, L.381, V.384, F.388 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:V.336, A:V.336, A:L.339, A:W.380, A:L.381, A:F.388 OLA.2: 6 residues within 4Å: Chain A: S.3, P.4, V.5, C.23, L.24 Ligands: OLA.4 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:V.5 OLA.3: 5 residues within 4Å: Chain A: Y.80, I.84, V.304, F.307, I.308 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:Y.80, A:I.84, A:V.304, A:F.307, A:F.307 Hydrogen bonds: A:Y.80, A:Y.80 OLA.4: 6 residues within 4Å: Chain A: P.4, C.23, F.68, I.71, A.72 Ligands: OLA.2 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.68, A:F.68

1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.5: 6 residues within 4Å: Chain A: Y.325, I.327, N.391, Y.392, K.393, I.394 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.391, A:K.393, A:I.394

1 x 51D: 3-chloro-4-fluoro-5-[6-(1H-pyrazol-1-yl)pyrimidin-4-yl]benzonitrile(Non-covalent)

51D.6: 17 residues within 4Å: Chain A: G.59, I.60, G.63, G.85, I.86, S.89, P.90, S.93, Y.94, V.335, L.339, W.380, F.383, S.400, V.401, S.404, A.405 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:I.60, A:I.86, A:P.90, A:F.383, A:V.401, A:A.405 Water bridges: A:L.339 pi-Stacking: A:W.380

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Christopher, J.A. et al., Fragment and Structure-Based Drug Discovery for a Class C GPCR: Discovery of the mGlu5 Negative Allosteric Modulator HTL14242 (3-Chloro-5-[6-(5-fluoropyridin-2-yl)pyrimidin-4-yl]benzonitrile). J.Med.Chem. (2015)

Release Date

2015-08-12

Peptides

Metabotropic glutamate receptor 5,Endolysin,Metabotropic glutamate receptor 5: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Metabotropic glutamate receptor 5,Endolysin,Metabotropic glutamate receptor 5

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