SMTL ID : 5cmd.1

Oligomer crystal structure of CC chemokine 5 (CCL5)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.09 Å

Oligo State

homo-hexamer

Ligands

11 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) SO4.2: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) SO4.3: 2 residues within 4Å: Chain A: S.28, G.29 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.29 SO4.4: 2 residues within 4Å: Chain A: K.53, R.56 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:K.53, A:R.56 SO4.5: 2 residues within 4Å: Chain B: K.52, K.53 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:K.53 SO4.6: 1 residues within 4Å: Chain B: R.14 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.14 SO4.7: 0 residues within 4Å: (No contacts) 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.56 Salt bridges: B:K.53 SO4.8: 2 residues within 4Å: Chain C: K.52, K.53 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:K.53 Salt bridges: C:K.52, C:K.53 SO4.9: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) SO4.10: 2 residues within 4Å: Chain E: K.52, K.53 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:K.53 Salt bridges: E:K.52 SO4.11: 3 residues within 4Å: Chain F: K.52, K.53, W.54 2 PLIP interactions: 2 interactions with chain F Hydrogen bonds: F:K.53, F:W.54

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liang, W.G. et al., Structural basis for oligomerization and glycosaminoglycan binding of CCL5 and CCL3. Proc.Natl.Acad.Sci.USA (2016)

Release Date

2016-04-13

Peptides

C-C motif chemokine 5: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

C-C motif chemokine 5

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