SMTL ID : 5cot.1

Structure and mechanism of a eukaryal nick-sealing RNA ligase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.69 Å

Oligo State

monomer

Ligands

1 x AMP: ADENOSINE MONOPHOSPHATE(Covalent)

AMP.1: 14 residues within 4Å: Chain A: T.146, T.169, V.170, K.171, L.172, S.176, E.228, F.249, V.282, V.316, K.318, K.327, I.329 Ligands: UNX.2 19 PLIP interactions: 19 interactions with chain A Hydrogen bonds: A:T.146, A:T.146, A:T.169, A:T.169, A:L.172, A:S.176, A:K.318 Water bridges: A:T.146, A:Q.148, A:R.150, A:K.171, A:K.171, A:K.171, A:K.171, A:S.176, A:K.327 Salt bridges: A:K.171, A:K.327 pi-Stacking: A:F.249

1 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.2: 3 residues within 4Å: Chain A: K.171, E.228 Ligands: AMP.1 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Unciuleac, M.C. et al., Structure and two-metal mechanism of a eukaryal nick-sealing RNA ligase. Proc.Natl.Acad.Sci.USA (2015)

Release Date

2015-10-28

Peptides

Naegleria gruberi RNA ligase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Naegleria gruberi RNA ligase

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