SMTL ID : 6vtf.2 (3 other biounits)

Naegleria gruberi RNA ligase with PPi

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.71 Å

Oligo State

monomer

Ligands

1 x POP: PYROPHOSPHATE 2-(Non-covalent)

POP.1: 5 residues within 4Å: Chain A: R.5, K.122, D.147, R.150, K.327 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:D.147 Water bridges: A:K.122, A:R.340 Salt bridges: A:R.5, A:K.122, A:K.122, A:R.150, A:K.171, A:K.327, A:K.327

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Unciuleac, M.C. et al., Caveat mutator: alanine substitutions for conserved amino acids in RNA ligase elicit unexpected rearrangements of the active site for lysine adenylylation. Nucleic Acids Res. (2020)

Release Date

2020-04-08

Peptides

RNA ligase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

RNA ligase

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