SMTL ID : 6vtf.4 (3 other biounits)

Naegleria gruberi RNA ligase with PPi

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.71 Å

Oligo State

monomer

Ligands

1 x POP: PYROPHOSPHATE 2-(Non-covalent)

POP.1: 6 residues within 4Å: Chain A: R.5, K.122, R.150, K.171, R.191, K.327 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:D.54 Water bridges: A:K.122, A:R.150 Salt bridges: A:R.5, A:K.122, A:K.122, A:R.150, A:K.171, A:R.191, A:R.191, A:K.327, A:K.327

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Unciuleac, M.C. et al., Caveat mutator: alanine substitutions for conserved amino acids in RNA ligase elicit unexpected rearrangements of the active site for lysine adenylylation. Nucleic Acids Res. (2020)

Release Date

2020-04-08

Peptides

RNA ligase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

RNA ligase

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