SMTL ID : 5cw1.1

Proteinase K complexed with 4-iodopyrazole

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

monomer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 8 residues within 4Å: Chain A: H.69, N.161, I.220, S.221, G.222, T.223, S.224, M.225 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.161, A:S.221, A:S.224, A:S.224, A:S.224 Salt bridges: A:H.69 SO4.2: 3 residues within 4Å: Chain A: S.62, S.63, R.64 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.62, A:S.62, A:S.63, A:S.63 Water bridges: A:S.63

3 x PYZ: 4-IODOPYRAZOLE(Non-covalent)

PYZ.3: 10 residues within 4Å: Chain A: S.132, L.133, G.134, G.135, A.158, A.159, G.160, N.161, Y.169, S.224 8 PLIP interactions: 8 interactions with chain A Water bridges: A:L.133, A:L.133, A:G.134, A:A.158, A:N.161, A:N.161, A:A.172 Halogen bonds: A:S.224 PYZ.4: 6 residues within 4Å: Chain A: E.174, P.175, V.177, T.179, V.198, D.200 3 PLIP interactions: 3 interactions with chain A Water bridges: A:S.197, A:S.197 Halogen bonds: A:T.179 PYZ.5: 11 residues within 4Å: Chain A: Y.104, I.107, L.133, G.134, G.135, G.136, Y.137, S.138, V.141, S.170, P.171 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.136 Water bridges: A:G.136, A:G.136

2 x IOD: IODIDE ION(Non-functional Binders)

IOD.6: 3 residues within 4Å: Chain A: P.18, G.19, Y.186 Ligand excluded by PLIP IOD.7: 1 residues within 4Å: Chain A: R.147 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bauman, J.D. et al., Rapid experimental SAD phasing and hot spot identification with halogenated fragments. Iucrj (2016)

Release Date

2015-12-30

Peptides

Proteinase K: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Proteinase K

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