SMTL ID : 5dgn.1

Crystal structure of human FPPS in complex with compound 13

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.08 Å

Oligo State

homo-dimer

Ligands

2 x 59Y: 8-(naphthalen-1-yl)quinoline-2-carboxylic acid(Non-covalent)

59Y.1: 12 residues within 4Å: Chain A: Y.7, K.54, Y.55, N.56, R.57, T.60, S.202, F.203, F.236, L.341, K.344, I.345 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:Y.7, A:K.54, A:N.56, A:R.57, A:F.203, A:F.203, A:L.341, A:K.344, A:I.345 Hydrogen bonds: A:K.54, A:N.56, A:N.56 Water bridges: A:R.57, A:R.57, A:Q.93, A:Q.93 Salt bridges: A:R.57 pi-Stacking: A:F.236, A:F.236 59Y.2: 12 residues within 4Å: Chain B: Y.7, K.54, Y.55, N.56, R.57, T.60, S.202, F.203, F.236, L.341, K.344, I.345 19 PLIP interactions: 19 interactions with chain B Hydrophobic interactions: B:Y.7, B:K.54, B:N.56, B:R.57, B:F.203, B:F.203, B:L.341, B:K.344, B:I.345 Hydrogen bonds: B:K.54, B:N.56, B:N.56 Water bridges: B:R.57, B:R.57, B:Q.93, B:Q.93 Salt bridges: B:R.57 pi-Stacking: B:F.236, B:F.236

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Marzinzik, A.L. et al., Discovery of Novel Allosteric Non-Bisphosphonate Inhibitors of Farnesyl Pyrophosphate Synthase by Integrated Lead Finding. Chemmedchem (2015)

Release Date

2015-09-30

Peptides

Farnesyl pyrophosphate synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
F

B
F

Farnesyl pyrophosphate synthase

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