SMTL ID : 5djp.1

Crystal structure of human FPPS in complex with biaryl compound 5

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

2 x 5BJ: 4-(naphthalen-1-yl)-1H-indole-2-carboxylic acid(Non-covalent)

5BJ.1: 12 residues within 4Å: Chain A: Y.7, K.54, N.56, R.57, T.60, S.202, F.203, F.236, L.341, K.344, I.345 Ligands: PO4.2 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:Y.7, A:N.56, A:R.57, A:F.203, A:L.341, A:K.344, A:I.345 Water bridges: A:K.54, A:R.57 Salt bridges: A:K.54, A:R.57 pi-Stacking: A:F.236, A:F.236, A:F.236 5BJ.3: 12 residues within 4Å: Chain B: Y.7, K.54, N.56, R.57, T.60, S.202, F.203, F.236, L.341, K.344, I.345 Ligands: PO4.4 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:Y.7, B:N.56, B:R.57, B:F.203, B:L.341, B:K.344, B:I.345 Water bridges: B:K.54, B:R.57 Salt bridges: B:K.54, B:R.57 pi-Stacking: B:F.236, B:F.236, B:F.236

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 6 residues within 4Å: Chain A: G.53, K.54, R.57, Q.93, R.110 Ligands: 5BJ.1 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:K.54, A:R.57, A:Q.93, A:Q.93 Water bridges: A:G.53, A:Y.55, A:Y.55, A:Y.55, A:N.56 Salt bridges: A:R.110 PO4.4: 6 residues within 4Å: Chain B: G.53, K.54, R.57, Q.93, R.110 Ligands: 5BJ.3 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:K.54, B:R.57, B:Q.93, B:Q.93 Water bridges: B:G.53, B:Y.55, B:Y.55, B:Y.55, B:N.56 Salt bridges: B:R.110

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Marzinzik, A.L. et al., Discovery of Novel Allosteric Non-Bisphosphonate Inhibitors of Farnesyl Pyrophosphate Synthase by Integrated Lead Finding. Chemmedchem (2015)

Release Date

2015-09-30

Peptides

Farnesyl pyrophosphate synthase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
F

B
F

Farnesyl pyrophosphate synthase

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