SMTL ID : 5dry.1 (1 other biounit)

Crystal structure of Dot1L in complex with inhibitor CPD3 [N-(1-(2-chlorophenyl)-1H-indol-6-yl)-2-(2-(5-(2-chlorophenyl)-1H-tetrazol-1-yl)acetyl)hydrazinecarboxamide]

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.41 Å

Oligo State

monomer

Ligands

1 x K: POTASSIUM ION(Non-covalent)

K.1: 4 residues within 4Å: Chain A: K.53, L.54, M.56, N.58 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:M.56, H2O.4, H2O.5

1 x 5EK: N-[1-(2-chlorophenyl)-1H-indol-6-yl]-2-{[5-(2-chlorophenyl)-1H-tetrazol-1-yl]acetyl}hydrazinecarboxamide(Non-covalent)

5EK.2: 20 residues within 4Å: Chain A: F.132, P.134, Y.137, S.141, L.144, V.145, M.148, D.162, G.164, S.165, G.166, V.167, Q.169, V.170, F.240, V.241, N.242, V.268, S.269, S.270 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:F.132, A:L.144, A:F.240, A:N.242 Hydrogen bonds: A:D.162, A:D.162, A:G.164, A:Q.169, A:Q.169, A:N.242 Water bridges: A:V.167, A:V.167, A:G.168, A:N.242, A:N.242 pi-Stacking: A:F.132

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chen, C. et al., Discovery of Novel Dot1L Inhibitors through a Structure-Based Fragmentation Approach. Acs Med.Chem.Lett. (2016)

Release Date

2016-06-15

Peptides

Histone-lysine N-methyltransferase, H3 lysine-79 specific: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Histone-lysine N-methyltransferase, H3 lysine-79 specific

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