SMTL ID : 5mw3.2 (1 other biounit)

Crystal structure of Dot1L in complex with inhibitor CPD1 [N6-(2,6-dichlorophenyl)-N6-(pent-2-yn-1-yl)quinoline-4,6-diamine] and inhibitor CPD2 [(R)-1-(7H-pyrrolo[2,3-d]pyrimidin-4-yl)piperidin-3-amine]

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.09 Å

Oligo State

monomer

Ligands

1 x 5JJ: N~6~-(2,6-dichlorophenyl)-N~6~-(pent-2-yn-1-yl)quinoline-4,6-diamine(Non-covalent)

5JJ.1: 15 residues within 4Å: Chain A: F.132, T.140, S.141, L.144, V.145, V.170, F.240, V.241, N.242, V.268, S.269, S.270, V.311, S.312, Y.313 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:F.132, A:F.132, A:L.144, A:V.145, A:V.170, A:F.240, A:N.242, A:Y.313 Hydrogen bonds: A:S.141 Water bridges: A:S.141, A:S.312 pi-Stacking: A:F.240

1 x 5JT: (3R)-1-(7H-pyrrolo[2,3-d]pyrimidin-4-yl)piperidin-3-amine(Non-covalent)

5JT.2: 7 residues within 4Å: Chain A: G.164, E.187, K.188, G.222, D.223, F.224, F.246 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:E.187, A:K.188, A:D.223, A:F.224 pi-Stacking: A:F.224, A:F.224 pi-Cation interactions: A:K.188

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mobitz, H. et al., Discovery of Potent, Selective, and Structurally Novel Dot1L Inhibitors by a Fragment Linking Approach. ACS Med Chem Lett (2017)

Release Date

2017-03-22

Peptides

Histone-lysine N-methyltransferase, H3 lysine-79 specific: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Histone-lysine N-methyltransferase, H3 lysine-79 specific

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