SMTL ID : 5ds8.1 (1 other biounit)

Context-independent anti-hypusine antibody FabHpu98 in complex with hypusine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

hetero-1-1-mer

Ligands

3 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: K.122, G.123, T.205, T.207 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.123, A:T.205, A:T.205, A:T.207 EDO.2: 5 residues within 4Å: Chain A: V.168, R.169, T.170 Chain B: T.166, N.176 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:V.168, A:T.170, B:N.176 EDO.3: 6 residues within 4Å: Chain A: T.87, L.113, T.115, P.152, E.153, Y.181 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.115, A:E.153 Water bridges: A:E.153

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 2 residues within 4Å: Chain A: G.167, R.169 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.167 Salt bridges: A:R.169 SO4.5: 2 residues within 4Å: Chain A: T.71, S.72 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.72 SO4.6: 3 residues within 4Å: Chain A: K.63 Chain B: S.95, N.96 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:K.63, A:K.63, B:N.96 Water bridges: A:Y.58, B:V.97 SO4.7: 3 residues within 4Å: Chain B: T.186, Q.187, S.190 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Q.187, B:S.190 SO4.8: 4 residues within 4Å: Chain B: Q.37, K.39, Q.42, D.81 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:Q.42, B:D.81 Water bridges: B:K.39, B:K.39, B:K.39 Salt bridges: B:K.39 SO4.9: 3 residues within 4Å: Chain B: E.27, Y.92, T.93 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Y.92, B:T.93, B:T.93

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhai, Q. et al., Structural Analysis and Optimization of Context-Independent Anti-Hypusine Antibodies. J.Mol.Biol. (2016)

Release Date

2016-01-20

Peptides

Fab Hpu98 Heavy Chain: A
Fab Hou98 Light Chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Fab Hpu98 Heavy Chain

Fab Hou98 Light Chain

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